Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 2.8e-101 372.1 208 100.0
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 7.8e-59 231.1 214 68.7
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.4e-44 183.7 220 63.6
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 4.3e-41 172.2 219 57.5
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 6.2e-40 168.3 223 57.4
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 8.9e-39 164.5 210 53.3
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 3.2e-36 156.0 205 53.7
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.0e-34 151.0 229 46.7
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.9e-33 146.7 228 45.6
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.8e-32 142.9 228 44.7
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 2.8e-32 142.9 228 44.7
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 5.2e-31 138.7 232 47.4
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.0e-30 136.7 225 43.6
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 8.4e-29 131.3 229 46.7
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 7.8e-27 124.8 232 44.8
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.0e-22 110.2 184 45.1
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 1.3e-21 107.5 210 42.4
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 3.2e-20 102.8 207 45.4
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 4.6e-19 99.0 212 39.6
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.0e-19 98.6 192 39.6
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.1e-17 94.4 102 52.9
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 2.5e-17 93.2 167 41.3
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 2.1e-16 90.1 198 37.9
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.6e-16 89.4 209 38.3
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 4.8e-16 89.0 180 37.2
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.4e-15 86.7 203 36.9
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 3.1e-15 86.3 151 44.4
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 4.0e-15 85.9 197 39.6
unitig_0.g296 Utricularia gibba HOM05D004654 ORTHO05D005414 5.3e-15 85.5 115 50.4
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.2e-14 84.3 189 36.5
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.5e-14 84.0 209 37.3
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.6e-14 83.2 220 35.5
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.6e-14 83.2 220 35.9
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 2.6e-14 83.2 194 35.6
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 1.7e-13 80.5 210 34.8
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.2e-13 80.1 200 36.5
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 2.9e-13 79.7 205 37.6
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 6.4e-13 78.6 181 36.5
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 6.4e-13 78.6 201 36.3
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.1e-12 77.8 178 36.0
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.4e-12 77.4 189 36.5
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.2e-12 76.3 198 34.8
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 7.1e-12 75.1 233 35.6
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 9.3e-12 74.7 212 36.3
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 9.3e-12 74.7 190 36.3
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 9.3e-12 74.7 196 36.2
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 9.3e-12 74.7 196 36.2
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 9.3e-12 74.7 198 36.9
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 9.3e-12 74.7 160 41.2
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.2e-11 74.3 190 36.8
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 2.1e-11 73.6 89 51.7
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.7e-11 73.2 196 37.2
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 2.7e-11 73.2 205 32.2
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 3.5e-11 72.8 175 37.7
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 3.5e-11 72.8 190 37.4
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 4.6e-11 72.4 166 39.2
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 4.6e-11 72.4 196 36.7
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 4.6e-11 72.4 192 31.8
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.6e-11 72.4 214 33.6
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 6.0e-11 72.0 181 35.9
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.0e-10 71.2 187 33.2
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.0e-10 71.2 207 38.2
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 1.0e-10 71.2 207 33.3
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 1.3e-10 70.9 92 46.7
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.8e-10 70.5 190 36.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 3.9e-10 69.3 188 34.6
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 3.9e-10 69.3 146 39.0
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 3.9e-10 69.3 203 36.0
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.1e-10 68.9 206 34.5
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 5.1e-10 68.9 196 34.7
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 6.7e-10 68.6 214 37.9
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 8.7e-10 68.2 200 35.5
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 8.7e-10 68.2 199 34.2
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.5e-09 67.4 193 38.3
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.9e-09 67.0 183 38.8
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.9e-09 67.0 150 35.3
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.5e-09 66.6 144 39.6
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 3.3e-09 66.2 130 35.4
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 3.3e-09 66.2 202 35.1
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 4.3e-09 65.9 178 33.7
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 4.3e-09 65.9 194 37.1
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 4.3e-09 65.9 203 38.9
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.3e-09 65.9 217 41.0
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 5.6e-09 65.5 210 31.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 7.4e-09 65.1 202 37.1
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.3e-08 64.3 193 34.2
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.3e-08 64.3 228 34.2
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.3e-08 64.3 204 32.8
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.3e-08 64.3 218 33.0
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 2.1e-08 63.5 182 35.2
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.1e-08 63.5 180 33.3
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 2.1e-08 63.5 216 31.9
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.1e-08 63.5 184 34.8
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 2.1e-08 63.5 203 32.0
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.7e-08 62.8 187 32.6
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.7e-08 62.8 183 31.7
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 3.7e-08 62.8 180 31.7
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.8e-08 62.4 180 33.9
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.8e-08 62.4 180 31.7
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 4.8e-08 62.4 180 33.9
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 6.2e-08 62.0 203 32.0
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 8.1e-08 61.6 113 38.1
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 8.1e-08 61.6 148 37.8
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.1e-07 61.2 77 48.1
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 1.4e-07 60.8 208 32.2
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.8e-07 60.5 198 33.8
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 1.8e-07 60.5 148 35.1
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.8e-07 60.5 122 41.8
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 2.4e-07 60.1 211 30.8
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.1e-07 59.7 94 54.3
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 5.3e-07 58.9 182 32.4
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 5.3e-07 58.9 139 38.1
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 6.9e-07 58.5 185 33.5
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 6.9e-07 58.5 185 33.5
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 9.0e-07 58.2 185 31.9
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 9.0e-07 58.2 190 38.9
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 9.0e-07 58.2 205 30.7
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 9.0e-07 58.2 232 33.2
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.5e-06 57.4 193 39.9
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.5e-06 57.4 141 35.5
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.5e-06 57.4 139 39.6
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.5e-06 57.4 141 34.8
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.5e-06 57.4 102 40.2
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 2.0e-06 57.0 178 30.9
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 2.0e-06 57.0 56 53.6
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.6e-06 56.6 50 58.0
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 2.6e-06 56.6 172 36.6
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 2.6e-06 56.6 172 36.6
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 4.5e-06 55.8 196 31.1
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 7.6e-06 55.1 173 32.9
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 7.6e-06 55.1 173 32.9
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 7.6e-06 55.1 130 39.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 7.6e-06 55.1 160 36.9
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 9.9e-06 54.7 148 33.8


User provided reference genes

Program Settings