Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 0.0e+00 1085.1 576 100.0
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.8e-97 360.9 596 45.1
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 5.4e-94 349.4 540 46.5
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 2.7e-93 347.1 586 45.9
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.3e-92 344.7 602 43.2
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.1e-91 341.7 538 45.2
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 5.2e-89 332.8 589 42.3
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 6.4e-87 325.9 609 42.0
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.7e-84 317.8 606 40.1
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 6.2e-82 309.3 614 39.6
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 1.8e-81 307.8 460 45.4
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.4e-81 307.4 565 42.3
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.5e-80 304.7 582 39.2
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 2.0e-80 304.3 604 41.6
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 4.4e-80 303.1 604 41.6
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.6e-80 302.4 589 40.9
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.3e-79 301.6 614 38.9
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.4e-78 298.1 412 48.5
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.6e-77 294.7 490 43.1
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 3.5e-77 293.5 600 41.8
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 4.6e-77 293.1 572 41.3
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.3e-76 290.8 615 39.7
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.3e-76 290.8 595 39.2
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.5e-75 287.3 274 62.8
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.3e-75 287.0 560 39.8
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.3e-75 287.0 451 43.5
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.2e-74 282.7 564 39.9
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 2.0e-72 277.7 645 38.0
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 3.4e-72 276.9 488 43.4
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 4.5e-72 276.6 567 39.7
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.2e-71 274.2 564 39.7
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 4.9e-71 273.1 591 38.9
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 6.4e-71 272.7 526 40.7
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.2e-69 268.5 583 38.1
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 2.1e-69 267.7 579 39.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 2.3e-68 264.2 585 37.9
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 3.0e-68 263.8 565 39.5
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.5e-67 260.8 612 36.4
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 4.3e-67 260.0 368 47.6
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 4.3e-67 260.0 460 42.2
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 9.6e-67 258.8 470 42.1
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.3e-66 258.5 495 40.4
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.8e-66 257.3 487 41.5
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.1e-65 255.4 580 37.2
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.8e-65 254.6 564 35.6
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.8e-65 254.6 473 40.0
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.4e-65 254.2 591 36.0
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.4e-65 254.2 486 40.3
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 2.4e-65 254.2 578 38.4
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 3.1e-65 253.8 314 52.2
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 5.3e-65 253.1 419 42.2
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 6.9e-65 252.7 609 34.6
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.5e-64 251.5 593 37.4
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 2.0e-64 251.1 408 44.4
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 3.4e-64 250.4 580 37.1
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 4.9e-63 246.5 495 42.0
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 4.9e-63 246.5 532 37.6
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.5e-62 244.2 417 42.2
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.5e-62 244.2 417 42.2
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 4.2e-62 243.4 592 36.1
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 2.1e-61 241.1 498 37.8
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.7e-61 240.7 568 36.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.3e-60 237.7 611 36.3
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 4.3e-59 233.4 522 37.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 9.6e-59 232.3 586 36.9
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 9.6e-59 232.3 461 39.7
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 2.1e-58 231.1 583 34.5
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 3.7e-58 230.3 584 37.3
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.0e-56 224.6 379 42.5
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 2.6e-56 224.2 395 41.5
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.6e-56 224.2 461 39.5
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 5.8e-56 223.0 325 46.5
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.6e-56 222.6 429 39.2
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 7.6e-56 222.6 480 40.8
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 5.0e-55 219.9 586 33.6
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.1e-54 218.8 383 42.6
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.1e-54 218.8 579 33.0
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 1.9e-54 218.0 491 39.1
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.2e-54 217.2 481 37.6
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.2e-54 217.2 590 34.9
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 4.2e-54 216.9 632 34.3
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 5.5e-54 216.5 581 33.9
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.7e-53 214.2 607 35.3
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.6e-53 213.4 621 35.1
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 7.9e-53 212.6 528 34.3
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 7.9e-53 212.6 482 37.1
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.0e-52 212.2 338 44.4
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.3e-52 211.8 590 33.6
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-51 208.8 483 36.4
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 1.5e-51 208.4 307 46.6
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 2.2e-50 204.5 390 40.5
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.1e-49 202.2 483 35.6
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.8e-49 201.4 258 51.6
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 4.1e-49 200.3 585 33.0
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.0e-48 198.0 434 36.6
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 2.6e-48 197.6 570 34.2
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 3.8e-47 193.7 279 48.4
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.5e-46 191.0 499 33.1
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 3.2e-46 190.7 529 34.6
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 4.6e-45 186.8 560 34.6
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.0e-44 184.1 458 36.2
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.2e-42 177.9 472 32.8
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.8e-42 176.8 465 32.3
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.8e-41 174.9 319 43.3
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 2.0e-40 171.4 392 35.7
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 4.5e-40 170.2 391 35.5
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 2.1e-37 161.4 383 34.5
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 2.7e-37 161.0 388 35.1
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 6.7e-36 156.4 391 34.5
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 3.7e-34 150.6 363 34.4
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.0e-32 144.8 431 30.4
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 2.6e-32 144.4 379 33.8
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 1.7e-31 141.7 514 30.5
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 2.2e-31 141.4 410 32.0
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 3.8e-31 140.6 445 30.1
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 5.0e-31 140.2 410 31.7
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 2.5e-30 137.9 360 34.7
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 4.2e-30 137.1 545 29.5
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 5.5e-30 136.7 260 40.0
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 9.4e-30 136.0 263 39.5
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.2e-29 135.6 380 33.2
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.7e-29 134.4 319 36.1
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 6.1e-29 133.3 375 34.1
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.4e-28 132.1 388 33.2
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.4e-28 132.1 448 30.8
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 2.6e-27 127.9 317 32.8
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 9.7e-27 125.9 361 33.2
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.7e-26 125.2 205 43.4
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 3.7e-26 124.0 248 39.9
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 3.7e-26 124.0 448 30.4
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 8.2e-26 122.9 247 39.3
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.4e-25 121.3 128 51.6
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.0e-20 105.9 450 27.8
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 8.8e-20 102.8 187 40.1
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.5e-19 99.8 225 36.4
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.6e-16 92.0 241 36.9
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.2e-15 88.2 95 46.3
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 4.0e-12 77.4 221 30.8
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 1.3e-10 72.4 133 42.9
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.9e-10 70.5 149 40.3
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.0e-08 65.1 83 50.6
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 6.6e-07 60.1 154 31.8
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 1.1e-06 59.3 164 29.3
SEGI_28173 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 4.3e-06 57.4 86 36.0


User provided reference genes

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