Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 3.7e-105 384.8 184 100.0
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.2e-82 310.1 183 77.6
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 7.1e-80 300.8 181 77.9
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 1.3e-78 296.6 182 74.7
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 5.2e-75 284.6 176 71.6
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 6.4e-73 277.7 172 70.3
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 6.4e-73 277.7 172 70.3
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 2.1e-71 272.7 172 69.8
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 2.7e-71 272.3 174 69.5
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 7.8e-71 270.8 177 67.2
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 2.3e-70 269.2 172 67.4
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 3.9e-70 268.5 171 69.0
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.5e-69 266.5 174 67.8
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 4.3e-69 265.0 175 66.9
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.2e-68 263.5 184 64.1
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 2.1e-68 262.7 182 62.6
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.6e-68 261.9 182 67.6
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 6.2e-68 261.2 186 62.4
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.1e-67 260.4 186 63.4
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.1e-67 260.4 174 67.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.4e-67 260.0 172 67.4
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.8e-67 259.6 179 64.2
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.4e-67 259.2 179 65.4
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 2.4e-67 259.2 179 64.8
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 3.1e-67 258.8 181 64.1
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 3.1e-67 258.8 184 63.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 4.0e-67 258.5 184 62.0
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 4.0e-67 258.5 180 64.4
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 5.2e-67 258.1 179 65.4
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 5.2e-67 258.1 179 65.4
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 6.8e-67 257.7 175 64.6
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 6.8e-67 257.7 180 62.8
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.2e-66 256.9 178 62.9
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.2e-66 256.9 182 63.7
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.2e-66 256.9 175 64.0
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.5e-66 256.5 182 63.2
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 2.0e-66 256.1 179 64.2
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 2.6e-66 255.8 187 64.2
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 2.6e-66 255.8 179 62.0
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 9.9e-66 253.8 175 65.1
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.3e-65 253.4 178 64.0
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.7e-65 253.1 172 64.5
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.7e-65 253.1 179 64.2
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 2.2e-65 252.7 186 63.4
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 2.2e-65 252.7 179 63.1
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.2e-65 252.7 175 64.6
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 2.2e-65 252.7 175 64.6
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.9e-65 252.3 173 67.1
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 6.4e-65 251.1 180 62.8
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 6.4e-65 251.1 180 62.8
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.1e-64 250.4 174 63.2
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 1.1e-64 250.4 172 64.5
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.4e-64 250.0 176 64.8
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.9e-64 249.6 187 63.1
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.9e-64 249.6 177 63.8
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 2.4e-64 249.2 183 62.8
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 3.2e-64 248.8 178 65.2
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 3.2e-64 248.8 178 64.6
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 5.4e-64 248.1 172 64.5
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 5.4e-64 248.1 179 64.2
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 9.3e-64 247.3 179 62.0
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.2e-63 246.9 172 64.5
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.2e-63 246.9 172 64.0
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.6e-63 246.5 177 62.1
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 2.1e-63 246.1 172 64.0
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 2.1e-63 246.1 172 65.1
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 3.5e-63 245.4 175 61.7
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.5e-63 245.4 172 62.8
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 4.6e-63 245.0 176 61.4
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 6.0e-63 244.6 179 62.6
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 7.8e-63 244.2 178 61.8
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 7.8e-63 244.2 184 59.8
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 1.3e-62 243.4 173 63.0
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 3.0e-62 242.3 178 61.2
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 6.6e-62 241.1 171 63.7
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 6.6e-62 241.1 170 62.9
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.5e-61 240.0 178 60.1
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 2.5e-61 239.2 176 62.5
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.5e-61 239.2 164 64.6
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.3e-61 238.8 172 62.2
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 3.3e-61 238.8 173 63.0
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 4.3e-61 238.4 172 63.4
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 4.3e-61 238.4 168 64.3
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.8e-59 233.0 173 61.3
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 5.3e-59 231.5 155 65.8
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 6.9e-59 231.1 166 63.3
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 1.5e-58 229.9 169 62.1
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 3.4e-58 228.8 169 61.5
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 7.6e-58 227.6 170 60.0
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.9e-57 225.7 150 66.7
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 1.1e-56 223.8 172 58.7
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.4e-56 223.4 170 57.6
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.9e-56 223.0 149 64.4
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.6e-55 218.4 140 67.9
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 6.0e-55 218.0 180 56.7
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 7.9e-55 217.6 173 55.5
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 7.9e-55 217.6 169 58.0
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.6e-54 214.5 151 61.6
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 8.7e-54 214.2 149 63.8
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.6e-52 209.9 167 59.3
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 6.2e-52 208.0 162 58.0
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.8e-51 206.5 170 56.5
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 3.2e-48 195.7 172 54.1
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 7.9e-47 191.0 154 57.1
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 4.3e-45 185.3 175 48.6
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 5.6e-45 184.9 171 48.5
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.1e-43 180.6 177 47.5
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.3e-41 173.7 181 44.8
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.1e-40 170.6 133 54.1
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 1.8e-38 163.3 176 47.2
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 3.7e-36 155.6 121 56.2
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.8e-35 153.3 116 59.5
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.1e-27 125.9 133 51.1
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 8.8e-22 107.8 155 43.2
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.4e-19 100.5 178 38.2
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 1.2e-18 97.4 88 58.0
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 3.4e-18 95.9 173 32.4
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.4e-16 90.5 59 59.3
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.0e-13 80.1 97 46.4
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 7.2e-08 61.6 173 27.7
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 9.4e-08 61.2 178 29.8
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 2.3e-06 56.6 177 27.1
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 4.0e-06 55.8 177 27.1


User provided reference genes

Program Settings