Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 5.5e-76 287.7 164 100.0
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 6.1e-59 231.1 165 84.8
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 6.8e-58 227.6 166 80.1
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 3.4e-57 225.3 166 74.1
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 3.4e-57 225.3 169 73.4
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 9.8e-57 223.8 194 74.2
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 2.3e-50 202.6 165 75.2
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 4.4e-49 198.4 162 66.7
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 9.8e-49 197.2 165 66.7
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.2e-48 196.1 164 70.7
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 2.2e-48 196.1 164 70.7
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.8e-48 195.7 164 70.7
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 3.7e-48 195.3 166 66.3
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 4.1e-47 191.8 165 72.1
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 2.0e-46 189.5 169 62.1
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 6.6e-45 184.5 165 63.6
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 1.9e-44 183.0 164 62.8
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.9e-44 183.0 163 62.0
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.6e-43 179.9 165 63.6
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 1.4e-42 176.8 160 61.2
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 2.3e-42 176.0 165 66.1
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 3.0e-42 175.6 166 59.6
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 3.0e-42 175.6 168 60.1
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 4.0e-42 175.3 162 58.6
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 3.4e-41 172.2 163 62.0
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 4.4e-41 171.8 159 69.2
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 7.5e-41 171.0 168 60.7
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 7.5e-41 171.0 163 63.8
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 1.3e-40 170.2 168 60.1
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 2.9e-40 169.1 158 58.2
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 3.7e-40 168.7 159 59.1
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 3.7e-40 168.7 171 57.9
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 6.4e-40 167.9 166 56.6
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 1.1e-39 167.2 163 56.4
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.1e-39 167.2 163 57.7
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 1.1e-39 167.2 165 57.0
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 1.1e-39 167.2 159 59.1
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 1.1e-39 167.2 163 56.4
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 2.4e-39 166.0 162 58.0
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 3.2e-39 165.6 165 55.2
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 4.1e-39 165.2 168 63.7
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 5.4e-39 164.9 162 61.7
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 5.4e-39 164.9 163 56.4
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 7.0e-39 164.5 163 62.0
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 9.2e-39 164.1 155 58.1
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.2e-38 163.7 163 58.3
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.6e-38 163.3 163 56.4
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.6e-38 163.3 163 58.3
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 1.6e-38 163.3 179 56.4
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 1.6e-38 163.3 163 66.3
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.7e-38 162.5 162 66.0
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 3.5e-38 162.2 162 53.1
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 6.0e-38 161.4 178 53.4
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 7.8e-38 161.0 164 57.3
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 1.0e-37 160.6 162 66.0
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.3e-37 160.2 164 65.2
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 1.3e-37 160.2 165 61.8
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 2.3e-37 159.5 165 52.7
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 2.3e-37 159.5 157 58.0
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 3.0e-37 159.1 162 55.6
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 6.6e-37 157.9 165 61.8
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 8.6e-37 157.5 127 66.1
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 8.6e-37 157.5 164 59.8
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 1.1e-36 157.1 166 54.8
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 4.3e-36 155.2 163 60.1
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 4.3e-36 155.2 162 57.4
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 2.8e-35 152.5 167 61.1
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 4.7e-35 151.8 161 54.0
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 2.3e-34 149.4 164 53.0
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 3.1e-34 149.1 162 53.7
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 4.0e-34 148.7 166 60.8
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 6.8e-34 147.9 167 54.5
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 8.9e-34 147.5 163 55.2
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.5e-33 146.7 151 57.0
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 2.6e-33 146.0 162 53.7
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 2.6e-33 146.0 162 53.1
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 3.4e-33 145.6 160 54.4
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 9.8e-33 144.1 138 69.6
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 9.8e-33 144.1 153 52.3
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 8.3e-32 141.0 155 54.8
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 1.1e-31 140.6 159 55.3
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 5.4e-31 138.3 165 49.7
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 7.0e-31 137.9 158 53.8
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 1.2e-30 137.1 155 56.1
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 1.0e-29 134.0 163 52.1
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 2.3e-29 132.9 153 51.0
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 3.0e-29 132.5 162 49.4
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 8.6e-29 131.0 144 50.7
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.9e-28 129.8 168 49.4
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 2.5e-28 129.4 155 48.4
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 2.5e-28 129.4 185 46.5
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.6e-27 126.7 152 51.3
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 4.7e-27 125.2 151 51.7
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.4e-26 123.6 152 50.0
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 1.8e-26 123.2 155 46.5
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 4.0e-26 122.1 163 46.6
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 8.9e-26 120.9 159 48.4
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.5e-25 120.2 162 47.5
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 2.6e-25 119.4 160 46.9
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 4.4e-25 118.6 146 45.9
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 7.5e-25 117.9 163 46.6
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 9.9e-25 117.5 159 46.5
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.7e-24 116.7 162 45.1
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 2.4e-23 112.8 142 47.9
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 3.2e-23 112.5 161 44.1
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 9.2e-23 110.9 159 44.7
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 1.6e-22 110.2 148 46.6
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 2.7e-22 109.4 160 45.0
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 3.5e-22 109.0 162 45.7
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 4.6e-22 108.6 164 43.9
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 4.6e-22 108.6 163 46.0
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 4.6e-22 108.6 156 43.6
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 4.6e-22 108.6 157 45.9
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 6.0e-22 108.2 163 46.0
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 7.8e-22 107.8 155 43.9
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 1.0e-21 107.5 138 47.1
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 1.7e-21 106.7 162 43.8
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 1.7e-21 106.7 162 43.8
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 3.9e-21 105.5 139 46.0
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 5.1e-21 105.1 142 43.0
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 5.1e-21 105.1 114 53.5
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 6.6e-21 104.8 129 45.7
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 1.1e-20 104.0 142 43.0
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 1.1e-20 104.0 162 44.4
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 1.1e-20 104.0 142 47.2
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 1.5e-20 103.6 162 42.0
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 1.5e-20 103.6 139 43.9
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 1.5e-20 103.6 162 42.0
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 1.9e-20 103.2 141 44.0
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 1.9e-20 103.2 143 44.8
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 2.5e-20 102.8 139 43.9
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 8.1e-19 97.8 88 78.4
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 1.4e-18 97.1 138 45.7
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 6.8e-18 94.7 89 57.3
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 6.8e-18 94.7 89 57.3
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 6.8e-18 94.7 137 43.1
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 3.4e-17 92.4 159 38.4
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 4.4e-17 92.0 126 43.7
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 4.9e-16 88.6 154 44.8
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.1e-15 87.4 154 44.2
Duzib147G0221 Durio zibethinus HOM05D004226 ORTHO05D004842 2.4e-15 86.3 123 42.3
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 5.4e-15 85.1 140 43.6
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 5.4e-15 85.1 153 43.1
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 7.1e-15 84.7 156 41.7
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 2.7e-14 82.8 76 55.3
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.8e-14 81.3 153 41.8
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.8e-14 81.3 153 41.8
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 7.8e-14 81.3 152 42.1
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 1.7e-13 80.1 164 38.4
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 3.0e-13 79.3 62 67.7
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 6.6e-13 78.2 166 33.1
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 3.3e-12 75.9 89 49.4
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 7.3e-12 74.7 111 46.8
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 1.2e-11 73.9 69 52.2
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 4.7e-11 72.0 90 51.1
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 6.9e-10 68.2 164 31.1
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 2.0e-09 66.6 67 55.2
Nn4g25974 Nelumbo nucifera HOM05D066638 ORTHO05D004842 1.7e-08 63.5 60 55.0
Nn7g37876 Nelumbo nucifera HOM05D001231 ORTHO05D001012 2.9e-08 62.8 59 55.9
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 6.4e-08 61.6 140 31.4
SEGI_39221 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.4e-07 60.5 74 47.3
Nn7g37465 Nelumbo nucifera HOM05D004226 ORTHO05D004842 3.2e-07 59.3 60 51.7
SEGI_14551 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 3.2e-07 59.3 61 55.7
SEGI_24806 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 3.2e-07 59.3 61 55.7


User provided reference genes

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