Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.9e-130 469.2 239 100.0
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 5.2e-107 391.3 240 82.9
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.7e-97 359.8 252 74.2
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.1e-93 347.1 250 71.6
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.8e-91 337.8 243 71.6
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 2.0e-90 336.3 258 66.7
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 9.8e-90 334.0 250 67.6
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.7e-89 332.0 253 68.0
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 4.8e-89 331.6 246 69.1
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 8.3e-89 330.9 248 65.7
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.1e-88 330.5 247 70.0
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.4e-88 329.3 247 69.6
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.2e-87 327.0 249 65.1
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.6e-87 326.6 246 67.5
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 3.5e-87 325.5 252 65.1
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 5.9e-87 324.7 257 64.2
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.0e-86 323.9 239 63.2
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.0e-86 323.9 239 63.2
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 2.3e-86 322.8 241 66.4
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.3e-86 322.8 242 66.5
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 2.9e-86 322.4 254 64.2
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 3.8e-86 322.0 244 66.4
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 3.8e-86 322.0 243 65.4
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 6.5e-86 321.2 209 74.2
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.1e-85 320.5 252 61.9
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.9e-85 319.7 272 62.1
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 4.2e-85 318.5 251 63.3
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 5.5e-85 318.2 272 61.8
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 5.5e-85 318.2 240 66.2
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.5e-85 318.2 249 65.5
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 5.5e-85 318.2 239 66.9
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 9.5e-85 317.4 241 64.7
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.2e-84 317.0 250 66.0
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.6e-84 316.6 239 66.5
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.8e-84 315.8 238 66.4
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.8e-84 315.8 245 67.8
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 2.8e-84 315.8 242 64.5
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.8e-84 315.8 240 66.7
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 2.8e-84 315.8 250 63.2
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 2.8e-84 315.8 238 66.4
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.6e-84 315.5 256 64.1
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.7e-84 315.1 248 64.1
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 4.7e-84 315.1 242 66.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 6.1e-84 314.7 250 63.6
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 6.1e-84 314.7 234 66.7
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.1e-84 314.7 240 66.7
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.4e-83 313.5 268 61.9
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.8e-83 313.2 241 64.3
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.8e-83 313.2 240 66.2
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 4.0e-83 312.0 241 66.4
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.0e-83 312.0 239 64.9
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 5.2e-83 311.6 251 63.3
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.2e-82 310.5 239 64.4
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.6e-82 309.3 250 65.6
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 4.4e-82 308.5 211 73.5
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 5.7e-82 308.1 288 58.3
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 7.5e-82 307.8 233 62.7
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 9.8e-82 307.4 206 72.8
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 9.8e-82 307.4 237 62.4
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.8e-81 305.8 250 65.2
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.8e-81 305.8 189 76.2
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 2.8e-81 305.8 253 65.2
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 4.9e-81 305.1 240 61.7
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 6.3e-81 304.7 248 63.3
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 6.3e-81 304.7 268 60.4
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 8.3e-81 304.3 241 63.9
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.8e-80 303.1 254 60.6
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 2.4e-80 302.8 251 61.0
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.1e-80 302.4 254 63.4
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 3.1e-80 302.4 250 60.8
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.4e-80 301.6 246 60.2
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 7.0e-80 301.2 246 59.8
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 9.2e-80 300.8 248 60.9
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.6e-79 300.1 235 64.3
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 2.0e-79 299.7 235 62.1
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.7e-78 296.6 233 63.1
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.3e-78 296.2 235 62.6
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.3e-78 296.2 245 61.6
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 6.6e-78 294.7 233 61.8
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.9e-77 293.1 231 62.3
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.3e-77 292.4 240 63.3
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 7.3e-77 291.2 233 62.2
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.2e-76 290.4 236 60.6
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 2.1e-76 289.7 233 61.8
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.1e-76 289.7 246 62.2
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 3.6e-76 288.9 238 58.4
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 4.7e-76 288.5 236 60.6
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.8e-75 286.6 268 60.1
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 4.0e-75 285.4 241 61.0
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 5.2e-75 285.0 251 58.6
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 5.2e-75 285.0 345 49.9
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 8.9e-75 284.3 251 59.8
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.5e-74 283.5 238 60.1
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 4.4e-74 282.0 172 78.5
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.2e-73 279.6 235 60.0
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.4e-72 276.9 248 56.0
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 3.5e-71 272.3 249 56.6
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 1.0e-70 270.8 168 75.6
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 4.0e-67 258.8 211 62.6
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 6.8e-67 258.1 246 53.3
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 7.5e-66 254.6 194 63.9
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 8.3e-65 251.1 243 55.6
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 8.3e-65 251.1 202 61.9
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 3.2e-64 249.2 186 65.6
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 4.1e-64 248.8 237 54.0
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 7.0e-64 248.1 199 61.3
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 7.8e-63 244.6 226 55.3
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.3e-62 243.8 216 55.6
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 6.6e-62 241.5 184 64.7
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 7.3e-61 238.0 247 55.1
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.6e-60 236.9 188 62.8
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 2.1e-60 236.5 168 68.5
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 8.1e-60 234.6 146 75.3
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.4e-58 228.8 245 49.4
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.0e-54 216.1 183 57.9
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.0e-54 216.1 162 64.2
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 7.3e-53 211.5 186 61.8
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.4e-51 207.2 170 61.2
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.1e-51 206.1 185 56.8
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 6.8e-51 204.9 177 60.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.7e-49 200.3 186 54.3
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.7e-49 200.3 219 50.7
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.9e-45 186.8 228 40.8
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 5.6e-45 185.3 146 64.4
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 6.9e-43 178.3 219 44.3
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 6.4e-41 171.8 117 70.9
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 9.3e-40 167.9 165 53.9
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.6e-39 167.2 154 56.5
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 3.5e-39 166.0 188 50.5
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 7.8e-39 164.9 152 60.5
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 1.3e-38 164.1 157 56.1
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 2.8e-36 156.4 129 64.3
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.0e-35 152.5 101 76.2
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.3e-33 147.5 170 50.0
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 5.4e-32 142.1 125 56.8
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 7.1e-32 141.7 101 63.4
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 4.6e-31 139.0 182 44.0
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 1.3e-28 131.0 112 59.8
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 6.2e-28 128.6 115 56.5
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 4.2e-24 115.9 198 36.9
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 4.6e-23 112.5 127 48.0
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 4.6e-23 112.5 127 48.0
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.0e-22 109.8 65 75.4
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 3.3e-21 106.3 67 67.2
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 4.0e-19 99.4 68 72.1
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 2.2e-17 93.6 70 65.7
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 8.4e-17 91.7 64 64.1
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.2e-15 87.8 120 45.0
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 7.4e-13 78.6 52 71.2
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.7e-12 76.3 87 51.7
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.8e-11 73.9 105 45.7
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.4e-11 73.6 87 49.4
Oeu020446.1 Olea europaea HOM05D004791 ORTHO05D005637 3.0e-06 56.6 84 41.7


User provided reference genes

Program Settings