Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 2.7e-86 322.0 166 100.0
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 6.0e-38 161.4 148 60.1
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 3.7e-35 152.1 204 48.0
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 6.2e-35 151.4 203 47.8
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.8e-34 149.8 157 54.8
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 4.0e-34 148.7 183 50.8
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.2e-33 147.1 195 47.2
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.0e-33 146.4 166 51.8
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 7.6e-33 144.4 168 52.4
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.7e-32 143.3 173 50.9
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.2e-32 142.9 174 50.6
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 6.5e-32 141.4 155 52.3
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 6.5e-32 141.4 164 51.2
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 8.4e-32 141.0 163 52.8
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 8.4e-32 141.0 148 55.4
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.1e-31 140.6 191 47.1
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.4e-31 140.2 144 56.2
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.4e-31 140.2 148 54.7
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.5e-31 139.4 155 51.0
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.2e-31 139.0 171 50.3
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 3.2e-31 139.0 148 53.4
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 4.2e-31 138.7 156 51.3
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 4.2e-31 138.7 136 58.1
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 5.5e-31 138.3 164 51.2
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 7.1e-31 137.9 182 47.8
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 9.3e-31 137.5 173 49.7
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.2e-30 137.1 164 51.2
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.6e-30 136.7 160 53.1
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.6e-30 136.7 160 50.0
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.1e-30 136.3 201 42.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.5e-30 135.6 149 53.0
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 3.5e-30 135.6 167 48.5
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 4.6e-30 135.2 165 50.3
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 4.6e-30 135.2 176 48.3
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 4.6e-30 135.2 176 48.3
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 6.0e-30 134.8 153 52.9
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 6.0e-30 134.8 148 53.4
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 6.0e-30 134.8 174 48.9
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 6.0e-30 134.8 197 44.7
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 7.9e-30 134.4 159 49.1
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 7.9e-30 134.4 194 45.9
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 1.0e-29 134.0 228 39.0
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.0e-29 134.0 176 48.3
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.0e-29 134.0 155 51.0
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.3e-29 133.7 167 48.5
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.8e-29 133.3 145 53.1
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 3.0e-29 132.5 176 47.7
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 3.0e-29 132.5 164 50.0
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 3.9e-29 132.1 151 51.7
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.9e-29 132.1 148 52.7
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 3.9e-29 132.1 159 49.1
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 5.1e-29 131.7 182 46.7
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 5.1e-29 131.7 195 45.1
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 5.1e-29 131.7 152 53.3
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.5e-28 129.4 183 43.7
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 2.5e-28 129.4 168 48.2
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 3.3e-28 129.0 210 42.9
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 3.3e-28 129.0 206 42.7
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.3e-28 128.6 160 50.6
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 7.4e-28 127.9 195 43.1
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.3e-27 127.1 173 46.2
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.3e-27 127.1 154 50.0
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.6e-27 126.7 193 43.0
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.6e-27 126.7 183 44.3
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 6.2e-27 124.8 209 41.6
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.1e-26 124.0 171 46.2
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.8e-26 123.2 148 48.6
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.1e-26 122.5 147 51.7
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 4.0e-26 122.1 206 40.8
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 9.0e-26 120.9 149 47.0
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.2e-25 120.6 227 38.8
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.2e-25 120.6 163 45.4
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.8e-24 115.5 120 51.7
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.5e-24 114.8 197 39.1
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 6.5e-24 114.8 178 41.6
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.9e-23 113.2 148 47.3
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 3.2e-23 112.5 158 45.6
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 5.5e-23 111.7 148 47.3
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 7.1e-23 111.3 145 49.0
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.2e-22 110.5 136 47.1
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.1e-22 109.8 175 40.0
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.0e-21 107.5 141 47.5
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.8e-21 106.7 96 58.3
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 2.3e-21 106.3 151 43.7
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.5e-20 103.6 148 45.3
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.9e-20 103.2 143 43.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.3e-20 102.4 158 41.1
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 4.3e-20 102.1 163 39.9
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.3e-19 100.5 97 60.8
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 2.2e-19 99.8 105 52.4
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 3.7e-19 99.0 164 40.9
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 4.8e-19 98.6 107 54.2
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 6.3e-19 98.2 104 53.8
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 6.3e-19 98.2 153 39.9
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 6.3e-19 98.2 107 55.1
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 6.3e-19 98.2 162 40.7
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.1e-18 97.4 105 55.2
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.4e-18 97.1 211 36.0
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.4e-18 97.1 107 53.3
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.8e-18 96.7 171 40.9
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 3.1e-18 95.9 159 40.9
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 9.0e-18 94.4 100 55.0
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 9.0e-18 94.4 165 39.4
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 1.5e-17 93.6 104 51.9
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.6e-17 92.8 153 39.2
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.4e-17 92.4 107 52.3
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.5e-17 92.0 175 37.7
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 5.9e-17 91.7 122 47.5
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 7.7e-17 91.3 104 51.9
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 1.0e-16 90.9 107 51.4
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.3e-16 90.5 107 49.5
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.3e-16 90.5 145 38.6
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 3.8e-16 89.0 104 51.0
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 5.0e-16 88.6 109 46.8
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 5.0e-16 88.6 107 50.5
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 6.5e-16 88.2 105 51.4
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.9e-15 86.7 169 35.5
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 3.2e-15 85.9 105 49.5
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 7.2e-15 84.7 107 49.5
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.2e-14 84.0 107 46.7
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 3.6e-14 82.4 117 42.7
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.6e-14 82.0 81 53.1
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 6.1e-14 81.6 148 39.2
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.1e-14 81.6 134 42.5
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.0e-13 80.9 104 46.2
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.4e-13 80.5 114 44.7
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.4e-13 80.5 114 44.7
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.4e-13 80.5 109 44.0
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.3e-13 79.7 127 40.2
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 3.9e-13 79.0 108 38.9
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 6.7e-13 78.2 160 35.6
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 4.3e-12 75.5 102 43.1
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.3e-11 73.9 72 56.9
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 3.7e-11 72.4 85 51.8
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.7e-11 72.4 82 47.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 4.8e-11 72.0 153 35.3
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 5.3e-10 68.6 165 34.5
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 6.9e-10 68.2 37 83.8
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 9.1e-10 67.8 99 41.4
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.1e-10 67.8 50 64.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.2e-09 67.4 95 45.3
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.5e-09 67.0 162 34.0
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.9e-08 62.8 107 39.3
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.9e-08 62.8 38 71.1
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 5.0e-08 62.0 62 56.5
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 5.0e-08 62.0 62 50.0
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 6.5e-08 61.6 36 77.8
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.1e-07 60.8 60 53.3
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.1e-07 60.8 36 72.2
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.9e-07 60.1 64 46.9
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.2e-07 59.3 35 77.1
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.2e-07 58.9 37 81.1
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 7.2e-07 58.2 37 73.0
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 9.4e-07 57.8 45 60.0
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.6e-06 57.0 37 70.3
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.7e-06 56.2 47 59.6
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 3.6e-06 55.8 36 83.3


User provided reference genes

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