Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.1e-303 1045.8 511 100.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 1.7e-277 958.7 508 92.1
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 3.7e-264 914.4 508 88.0
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 3.4e-257 891.3 508 85.8
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 2.7e-254 881.7 498 85.7
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 5.8e-249 864.0 506 83.6
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 7.6e-249 863.6 503 83.9
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 7.6e-249 863.6 526 81.7
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 8.4e-248 860.1 506 82.6
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 1.1e-247 859.8 506 82.4
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 3.2e-247 858.2 509 81.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 2.7e-246 855.1 506 82.2
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 4.6e-246 854.4 499 82.8
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 1.0e-245 853.2 503 81.7
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 1.3e-245 852.8 503 82.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 5.1e-245 850.9 519 81.3
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 8.7e-245 850.1 499 82.8
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 7.3e-244 847.0 503 81.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 2.1e-243 845.5 503 81.1
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 3.6e-243 844.7 508 80.3
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 1.4e-242 842.8 500 82.0
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 1.8e-242 842.4 503 81.1
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 2.4e-242 842.0 518 79.2
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 3.1e-242 841.6 504 81.3
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 3.1e-242 841.6 502 80.9
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 5.3e-242 840.9 504 81.3
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 5.3e-242 840.9 571 74.8
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.2e-241 839.7 500 81.2
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 2.6e-241 838.6 501 81.2
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 5.8e-241 837.4 501 81.0
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 7.6e-241 837.0 508 80.1
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 1.3e-240 836.3 500 80.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 1.7e-240 835.9 499 81.0
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 1.7e-240 835.9 499 82.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 2.9e-240 835.1 499 80.6
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 2.9e-240 835.1 508 80.5
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 4.9e-240 834.3 514 80.0
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 6.4e-240 833.9 501 80.4
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 8.4e-240 833.6 500 81.0
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 1.4e-239 832.8 509 78.4
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 2.4e-239 832.0 508 80.1
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 3.2e-239 831.6 499 79.6
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 5.4e-239 830.9 499 80.8
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 7.1e-239 830.5 499 78.8
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 7.1e-239 830.5 498 82.9
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 1.2e-238 829.7 499 80.4
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 1.6e-238 829.3 498 79.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 2.7e-238 828.6 499 79.4
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 3.5e-238 828.2 499 79.0
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 7.9e-238 827.0 516 78.9
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 1.0e-237 826.6 499 80.2
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 1.3e-237 826.2 500 79.2
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 3.0e-237 825.1 499 79.8
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 3.0e-237 825.1 499 79.8
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 3.9e-237 824.7 499 79.8
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 5.1e-237 824.3 508 78.1
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 1.1e-236 823.2 500 79.6
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 1.9e-236 822.4 499 79.8
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 1.9e-236 822.4 500 80.6
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.5e-236 822.0 506 79.2
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 2.5e-236 822.0 499 79.6
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 4.3e-236 821.2 499 78.4
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 7.4e-236 820.5 498 79.9
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 1.3e-235 819.7 502 79.5
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 1.6e-235 819.3 499 79.4
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 1.6e-235 819.3 499 79.4
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 1.6e-235 819.3 499 79.4
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 1.6e-235 819.3 499 79.0
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 4.8e-235 817.8 499 79.0
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 8.1e-235 817.0 499 79.2
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 1.1e-234 816.6 499 78.2
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 4.0e-234 814.7 499 78.0
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 5.3e-234 814.3 499 78.8
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 5.3e-234 814.3 499 78.8
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 9.0e-234 813.5 499 77.4
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 1.2e-233 813.1 499 78.8
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 1.5e-233 812.8 503 79.1
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 2.0e-233 812.4 499 78.8
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 2.0e-233 812.4 499 77.8
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 2.6e-233 812.0 499 78.8
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 4.5e-233 811.2 499 78.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 5.8e-233 810.8 498 77.9
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 9.9e-233 810.1 501 78.0
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.7e-232 809.3 499 78.6
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 1.7e-232 809.3 499 77.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.7e-232 809.3 499 79.4
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 2.2e-232 808.9 498 77.7
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 2.2e-232 808.9 498 77.7
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 2.2e-232 808.9 503 76.9
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 2.2e-232 808.9 499 77.2
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 1.4e-231 806.2 499 77.2
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 3.2e-231 805.1 500 76.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 4.2e-231 804.7 517 75.8
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 4.2e-231 804.7 499 77.0
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 5.5e-231 804.3 499 77.6
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 9.3e-231 803.5 510 77.8
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 1.2e-230 803.1 499 77.8
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 2.7e-230 802.0 499 76.4
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 4.6e-230 801.2 480 80.6
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 1.0e-229 800.0 496 78.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.3e-229 799.7 499 77.6
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 8.7e-229 797.0 496 77.8
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 2.5e-228 795.4 500 76.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 2.4e-226 788.9 500 76.2
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 2.4e-226 788.9 571 69.4
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 4.0e-226 788.1 498 76.9
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 1.5e-225 786.2 571 69.4
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 2.0e-225 785.8 503 78.3
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 1.0e-224 783.5 498 75.7
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 1.0e-224 783.5 518 74.1
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 4.8e-219 764.6 514 74.7
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 5.3e-218 761.1 499 75.4
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.2e-214 750.0 415 86.0
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.1e-214 749.2 407 87.5
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 1.3e-211 740.0 490 73.3
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.5e-199 699.1 506 70.6
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 7.5e-188 661.0 504 62.7
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 4.8e-187 658.3 495 62.4
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 6.8e-181 637.9 537 57.5
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 2.6e-180 636.0 495 60.0
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 7.5e-180 634.4 496 61.1
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 1.7e-179 633.3 413 76.8
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.7e-163 580.1 454 63.4
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.8e-157 560.1 504 60.3
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.9e-154 550.1 388 70.9
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 3.3e-151 539.3 317 81.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 3.5e-145 519.2 357 67.2
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 9.9e-132 474.6 312 74.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.3e-107 394.4 248 75.0
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 3.3e-103 379.8 321 61.1
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 1.9e-74 284.3 164 82.9
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 7.5e-63 245.7 132 83.3
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.2e-47 195.3 148 62.8
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 6.6e-35 152.9 160 53.8
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 9.9e-31 139.0 156 48.7
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.3e-30 138.7 72 87.5
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 4.3e-26 123.6 97 64.9
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 4.2e-13 80.5 49 71.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 7.8e-12 76.3 49 71.4
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.3e-11 75.5 70 48.6
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 2.1e-09 68.2 33 93.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.5e-07 62.0 39 74.4
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 6.4e-06 56.6 37 67.6
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 6.4e-06 56.6 79 44.3


User provided reference genes

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