Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1185.6 605 100.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 2.1e-250 869.0 597 77.1
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 7.4e-227 790.8 604 69.4
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 1.7e-223 779.6 584 70.0
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 2.4e-209 732.6 608 64.8
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 6.9e-209 731.1 580 65.2
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 1.0e-207 727.2 600 63.8
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 1.3e-199 700.3 609 60.8
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 3.6e-197 692.2 609 60.1
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 3.6e-197 692.2 609 59.8
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 8.0e-197 691.0 619 58.5
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.3e-196 689.5 609 59.8
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 8.8e-196 687.6 609 59.4
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 1.2e-195 687.2 609 59.1
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 3.3e-195 685.6 609 59.6
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 1.7e-194 683.3 621 58.1
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 1.6e-192 676.8 611 58.6
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 1.1e-190 670.6 580 61.6
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 1.5e-190 670.2 609 57.5
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 2.5e-190 669.5 608 58.2
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 1.2e-189 667.2 601 57.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 4.4e-187 658.7 580 58.4
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 7.5e-187 657.9 608 56.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 9.8e-187 657.5 608 56.6
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.8e-186 656.0 616 56.2
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 4.1e-185 652.1 579 59.1
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 5.4e-185 651.7 608 55.4
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.0e-183 647.5 608 55.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 1.0e-183 647.5 579 58.7
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 1.3e-183 647.1 579 58.7
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 1.5e-182 643.7 616 55.2
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 2.5e-182 642.9 579 58.5
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 3.2e-182 642.5 613 55.0
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 4.7e-181 638.6 609 55.7
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 4.7e-181 638.6 592 56.2
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 6.1e-181 638.3 602 56.6
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.0e-180 637.5 605 55.0
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 2.3e-180 636.3 601 56.7
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 3.0e-180 636.0 608 55.4
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 5.2e-180 635.2 610 55.6
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.6e-179 632.9 584 56.2
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 1.7e-178 630.2 603 55.1
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 1.7e-178 630.2 606 54.5
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 6.3e-178 628.2 617 53.6
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 8.3e-178 627.9 609 55.0
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 1.4e-177 627.1 608 55.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 2.4e-177 626.3 608 55.1
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 2.4e-177 626.3 588 56.8
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 3.1e-177 625.9 615 53.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 1.2e-176 624.0 615 54.1
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 1.2e-176 624.0 616 54.1
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 3.5e-176 622.5 616 53.7
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 5.9e-176 621.7 616 53.6
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 7.7e-176 621.3 588 56.1
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 1.0e-175 620.9 616 53.7
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 2.3e-175 619.8 616 54.4
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 2.9e-175 619.4 607 53.9
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 2.9e-175 619.4 612 53.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 5.0e-175 618.6 582 55.5
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 6.6e-175 618.2 584 55.3
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 6.6e-175 618.2 609 53.9
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 6.6e-175 618.2 608 53.5
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 8.6e-175 617.8 616 53.7
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 1.5e-174 617.1 616 53.6
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 1.9e-174 616.7 613 53.3
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 2.5e-174 616.3 590 54.7
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 4.3e-174 615.5 601 55.4
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 2.1e-173 613.2 615 53.5
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 2.8e-173 612.8 607 53.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 6.1e-173 611.7 613 53.2
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 1.4e-172 610.5 591 54.5
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 1.8e-172 610.1 608 52.8
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 5.2e-172 608.6 589 54.8
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 2.0e-171 606.7 618 53.1
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.2e-170 603.2 605 51.4
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 4.9e-170 602.1 617 52.7
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 4.9e-170 602.1 617 52.7
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 8.3e-170 601.3 616 53.9
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 1.1e-169 600.9 588 54.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 3.2e-169 599.4 567 54.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 5.4e-169 598.6 616 53.7
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 5.4e-169 598.6 581 54.2
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 9.2e-169 597.8 608 52.0
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.6e-168 597.0 617 52.7
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 2.7e-168 596.3 589 52.8
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 2.7e-168 596.3 589 52.8
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 2.8e-165 586.3 601 52.9
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 2.8e-165 586.3 610 52.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 3.6e-165 585.9 603 52.1
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 4.7e-165 585.5 601 52.2
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 1.8e-164 583.6 604 51.3
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 1.8e-164 583.6 565 55.0
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 3.1e-164 582.8 584 53.9
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 5.2e-164 582.0 601 52.2
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 5.2e-164 582.0 566 53.4
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 8.9e-164 581.3 601 52.9
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 8.9e-164 581.3 609 50.7
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 7.5e-163 578.2 601 52.2
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 1.1e-161 574.3 602 52.2
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 1.1e-161 574.3 602 52.2
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 3.2e-161 572.8 610 51.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 1.2e-160 570.9 574 53.1
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 1.6e-160 570.5 566 53.2
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 1.6e-160 570.5 565 53.5
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 1.6e-160 570.5 565 53.5
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 3.5e-160 569.3 565 53.3
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 7.8e-160 568.2 551 53.7
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 1.1e-158 564.3 551 54.1
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 1.5e-158 563.9 612 50.8
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 1.3e-154 550.8 498 58.2
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 3.7e-154 549.3 627 48.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 7.1e-153 545.0 603 49.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 4.6e-152 542.3 607 48.1
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.6e-144 517.3 578 48.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 2.7e-136 490.0 491 53.4
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 5.3e-116 422.5 566 41.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 9.0e-116 421.8 572 42.3
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 9.0e-116 421.8 572 42.3
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 8.4e-114 415.2 579 40.6
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 4.2e-113 412.9 565 40.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 5.3e-92 342.8 476 44.7
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.3e-85 321.6 298 55.0
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.8e-76 291.2 330 51.5
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 2.7e-75 287.3 223 66.4
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 9.4e-73 278.9 557 36.4
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 3.7e-69 266.9 282 50.4
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.8e-68 264.6 210 64.8
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.5e-67 260.4 329 45.3
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.1e-65 255.4 339 46.3
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 2.8e-61 240.7 233 53.2
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.7e-42 178.3 139 63.3
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 2.9e-37 161.0 133 57.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 3.5e-35 154.1 138 59.4
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.8e-23 115.2 88 63.6
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 2.4e-20 104.8 97 53.6
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.8e-10 72.0 145 35.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.4e-07 61.6 137 34.3


User provided reference genes

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