Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 6.4e-66 254.2 156 100.0
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 9.4e-33 144.1 157 66.2
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 4.3e-30 135.2 153 66.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 4.3e-30 135.2 161 64.0
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.5e-27 126.7 161 60.2
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 5.9e-27 124.8 160 55.0
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.0e-26 124.0 161 61.5
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.7e-26 123.2 161 60.2
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 5.0e-26 121.7 189 54.5
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 5.0e-26 121.7 161 60.9
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.1e-25 120.6 145 61.4
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 3.2e-25 119.0 161 60.2
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 7.2e-25 117.9 155 62.6
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.6e-24 116.7 152 61.2
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.7e-24 115.2 141 62.4
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 4.7e-24 115.2 158 55.7
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.0e-23 112.5 162 58.0
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 5.1e-23 111.7 154 59.7
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 8.8e-23 110.9 129 65.1
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.5e-22 110.2 159 57.2
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.0e-22 109.8 161 58.4
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 2.6e-22 109.4 161 56.5
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.4e-22 108.6 161 57.1
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 5.7e-22 108.2 139 62.6
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 7.4e-22 107.8 161 55.3
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.1e-20 104.0 152 57.2
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.4e-20 102.8 158 55.1
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.5e-19 100.1 149 55.0
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 2.0e-19 99.8 105 73.3
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.5e-19 98.6 117 65.0
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.9e-19 98.2 142 57.7
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.3e-18 97.1 135 58.5
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.7e-18 96.7 125 63.2
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 2.9e-18 95.9 166 53.6
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 2.9e-18 95.9 107 71.0
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 3.8e-18 95.5 166 51.2
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 5.0e-18 95.1 124 64.5
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 8.5e-18 94.4 107 71.0
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.1e-17 94.0 116 65.5
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.4e-17 93.6 118 63.6
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 5.5e-17 91.7 120 64.2
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 5.5e-17 91.7 166 51.8
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 7.2e-17 91.3 93 75.3
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 9.4e-17 90.9 130 58.5
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 9.4e-17 90.9 131 58.0
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.2e-16 90.5 131 58.0
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.2e-16 90.5 135 62.2
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.6e-16 90.1 158 52.5
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.6e-16 90.1 93 76.3
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.7e-16 89.4 97 72.2
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 4.7e-16 88.6 104 72.1
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.7e-16 88.6 179 50.8
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 8.0e-16 87.8 167 50.9
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.0e-15 87.4 155 54.2
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.4e-15 87.0 130 60.0
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.8e-15 86.7 129 58.9
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.8e-15 86.7 99 74.7
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.3e-15 86.3 131 58.8
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 2.3e-15 86.3 120 55.0
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 2.3e-15 86.3 63 71.4
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.0e-15 85.9 93 69.9
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 3.0e-15 85.9 137 56.2
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 3.0e-15 85.9 155 50.3
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.0e-15 85.9 145 51.0
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 3.9e-15 85.5 93 69.9
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 3.9e-15 85.5 161 51.6
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 3.9e-15 85.5 93 69.9
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 3.9e-15 85.5 110 63.6
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.2e-15 85.1 104 67.3
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.2e-15 85.1 104 67.3
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.2e-15 85.1 104 67.3
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 5.2e-15 85.1 104 67.3
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 6.7e-15 84.7 130 56.9
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 8.8e-15 84.3 117 51.3
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 8.8e-15 84.3 139 49.6
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.1e-14 84.0 98 70.4
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 1.1e-14 84.0 95 70.5
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.1e-14 84.0 95 70.5
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 1.1e-14 84.0 95 70.5
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.1e-14 84.0 95 72.6
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 2.0e-14 83.2 95 70.5
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 5.7e-14 81.6 95 69.5
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 5.7e-14 81.6 98 60.2
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 5.7e-14 81.6 94 72.3
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 9.7e-14 80.9 93 60.2
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 9.7e-14 80.9 116 62.9
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 9.7e-14 80.9 89 68.5
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.3e-13 80.5 95 68.4
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.7e-13 80.1 93 60.2
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.7e-13 80.1 93 60.2
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.7e-13 80.1 98 60.2
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.7e-13 80.1 156 47.4
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-13 79.7 93 60.2
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.2e-13 79.7 93 60.2
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 2.2e-13 79.7 159 46.5
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 3.7e-13 79.0 94 61.7
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 4.8e-13 78.6 93 65.6
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 6.3e-13 78.2 92 59.8
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 6.3e-13 78.2 92 59.8
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 6.3e-13 78.2 119 57.1
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 8.2e-13 77.8 125 59.2
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 8.2e-13 77.8 93 65.6
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.1e-12 77.4 108 57.4
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.4e-12 77.0 154 50.0
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.4e-12 76.3 93 64.5
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 2.4e-12 76.3 94 59.6
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.4e-12 76.3 83 67.5
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 4.1e-12 75.5 95 57.9
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 5.3e-12 75.1 129 51.9
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 7.0e-12 74.7 94 58.5
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 7.0e-12 74.7 98 57.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 7.0e-12 74.7 98 57.1
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 9.1e-12 74.3 93 64.5
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.1e-12 74.3 94 59.6
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 9.1e-12 74.3 120 55.0
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.6e-11 72.8 88 51.1
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 3.5e-11 72.4 98 56.1
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.7e-11 71.2 93 60.2
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 7.7e-11 71.2 123 52.0
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 1.0e-10 70.9 91 58.2
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.3e-10 70.5 95 58.9
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.7e-10 70.1 140 48.6
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.2e-10 69.7 98 66.3
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.8e-10 68.9 106 56.6
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.0e-10 68.6 98 55.1
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.5e-09 67.0 114 41.2
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 2.5e-09 66.2 133 54.9
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 3.2e-09 65.9 142 49.3
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.2e-09 65.5 106 54.7
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.1e-08 63.2 110 51.8
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.7e-08 62.8 95 54.7
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 6.1e-08 61.6 104 55.8
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 2.3e-07 59.7 111 53.2
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 3.0e-07 59.3 149 36.2
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 3.0e-07 59.3 80 43.8
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 6.7e-07 58.2 57 71.9
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.5e-06 57.0 106 38.7
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 2.0e-06 56.6 143 36.4
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 2.0e-06 56.6 119 42.9
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 2.6e-06 56.2 116 34.5
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 9.7e-06 54.3 92 53.3


User provided reference genes

Program Settings