Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04405 Striga asiatica HOM05D003857 ORTHO05D004454 9.2e-48 193.4 107 100.0
SGA_v2.0_scaffold42G15994 Striga asiatica HOM05D003857 ORTHO05D004454 2.1e-28 129.0 107 70.1
MSTRG.13018 Avicennia marina HOM05D003857 ORTHO05D004454 7.1e-24 114.0 101 60.4
MSTRG.14482 Avicennia marina HOM05D003857 ORTHO05D004454 1.9e-21 105.9 93 61.3
SalBow8G3453 Salvia bowleyana HOM05D003857 ORTHO05D004454 2.5e-21 105.5 86 67.4
Migut.H01760 Erythranthe guttata HOM05D003857 ORTHO05D004454 7.4e-21 104.0 100 62.0
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 6.2e-20 100.9 102 56.9
Cc05_g14870 Coffea canephora HOM05D003857 ORTHO05D004454 7.6e-18 94.0 85 62.4
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 7.6e-18 94.0 86 57.0
PGSC0003DMG400022174 Solanum tuberosum HOM05D003857 ORTHO05D004454 1.7e-17 92.8 86 57.0
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 2.2e-17 92.4 86 55.8
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 2.9e-17 92.0 102 55.9
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 4.9e-17 91.3 87 59.8
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 1.1e-16 90.1 92 58.7
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 1.1e-16 90.1 92 58.7
Hma1.2p1_0889F.1_g232820 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 1.4e-16 89.7 85 62.4
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 2.4e-16 89.0 86 57.0
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 2.4e-16 89.0 86 57.0
Rhsim06G0228800 Rhododendron simsii HOM05D003857 ORTHO05D004454 3.2e-16 88.6 102 50.0
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 3.2e-16 88.6 87 55.2
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 7.1e-16 87.4 86 55.8
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 1.6e-15 86.3 87 52.9
Nitab4.5_0000461g0260 Nicotiana tabacum HOM05D003857 ORTHO05D004454 2.7e-15 85.5 84 54.8
MBI16_g22432_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 6.0e-15 84.3 91 51.6
Nitab4.5_0006886g0010 Nicotiana tabacum HOM05D003857 ORTHO05D004454 1.3e-14 83.2 84 53.6
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 2.3e-14 82.4 88 54.5
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 5.1e-14 81.3 93 51.6
Sc03g0011180 Simmondsia chinensis HOM05D003857 ORTHO05D004454 5.1e-14 81.3 83 54.2
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 6.7e-14 80.9 85 55.3
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 6.7e-14 80.9 85 55.3
CANSAT11G1184 Cannabis sativa HOM05D003857 ORTHO05D004454 8.7e-14 80.5 112 46.4
CAN.G337.6 Capsicum annuum HOM05D003857 ORTHO05D004454 8.7e-14 80.5 84 53.6
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 8.7e-14 80.5 88 51.1
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 8.7e-14 80.5 86 50.0
AUR62017087 Chenopodium quinoa HOM05D003857 ORTHO05D004454 1.1e-13 80.1 79 53.2
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.1e-13 80.1 85 55.3
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 1.1e-13 80.1 107 48.6
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 1.5e-13 79.7 104 50.0
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 1.5e-13 79.7 104 51.0
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.9e-13 79.3 85 54.1
Gohir.D01G076300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.9e-13 79.3 95 53.7
Gorai.002G099500 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.9e-13 79.3 95 53.7
Gohir.A01G091000 Gossypium hirsutum HOM05D003857 ORTHO05D004454 4.3e-13 78.2 95 51.6
PGR083G2342 Punica granatum HOM05D003857 ORTHO05D004454 4.3e-13 78.2 97 49.5
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 4.3e-13 78.2 93 51.6
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 5.6e-13 77.8 85 50.6
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 1.3e-12 76.6 88 48.9
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 1.3e-12 76.6 88 48.9
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.6e-12 76.3 86 52.3
Hund01891 Selenicereus undatus HOM05D003857 ORTHO05D004454 1.6e-12 76.3 84 50.0
Gohir.A13G133501 Gossypium hirsutum HOM05D003857 ORTHO05D004454 2.1e-12 75.9 86 47.7
Gohir.D13G136800 Gossypium hirsutum HOM05D003857 ORTHO05D004454 2.1e-12 75.9 86 47.7
Gorai.013G153300 Gossypium raimondii HOM05D003857 ORTHO05D004454 2.1e-12 75.9 86 47.7
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 2.8e-12 75.5 87 48.3
Sabra16G0240200 Salix brachista HOM05D003857 ORTHO05D004454 3.7e-12 75.1 86 52.3
DCAR_002236 Daucus carota HOM05D003857 ORTHO05D004454 6.2e-12 74.3 85 44.7
PSO210G1156 Papaver somniferum HOM05D003857 ORTHO05D004454 6.2e-12 74.3 103 45.6
Sc21g0003640 Simmondsia chinensis HOM05D003857 ORTHO05D004454 6.2e-12 74.3 83 50.6
Ciclev10009964m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.1e-11 73.6 110 42.7
Glyma.09G013000 Glycine max HOM05D003857 ORTHO05D004454 1.1e-11 73.6 86 46.5
vmacro22708 Vaccinium macrocarpon HOM05D003857 ORTHO05D004454 1.1e-11 73.6 82 50.0
Actinidia05015 Actinidia chinensis HOM05D003857 ORTHO05D004454 1.4e-11 73.2 86 47.7
TPR.G10580 Trifolium pratense HOM05D003857 ORTHO05D004454 1.4e-11 73.2 86 45.3
Glyma.15G117900 Glycine max HOM05D003857 ORTHO05D004454 1.8e-11 72.8 82 48.8
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.4e-11 72.4 87 46.0
PSO210G4960 Papaver somniferum HOM05D003857 ORTHO05D004454 3.1e-11 72.0 103 44.7
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 3.1e-11 72.0 86 43.0
CARHR087760 Cardamine hirsuta HOM05D003857 ORTHO05D004454 4.0e-11 71.6 90 48.9
Lalb_Chr15g0088131 Lupinus albus HOM05D003857 ORTHO05D004454 4.0e-11 71.6 87 43.7
Phvul.003G085900 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 4.0e-11 71.6 88 44.3
AL3G24920 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 5.3e-11 71.2 91 48.4
arahy.Tifrunner.gnm1.ann1.J6PND3 Arachis hypogaea HOM05D003857 ORTHO05D004454 5.3e-11 71.2 90 45.6
arahy.Tifrunner.gnm1.ann1.A9XG53 Arachis hypogaea HOM05D003857 ORTHO05D004454 6.9e-11 70.9 90 45.6
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 6.9e-11 70.9 87 42.5
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 9.0e-11 70.5 82 46.3
BolC1t05138H Brassica oleracea HOM05D003857 ORTHO05D004454 9.0e-11 70.5 90 46.7
Glyma.08G328700 Glycine max HOM05D003857 ORTHO05D004454 9.0e-11 70.5 84 51.2
Glyma.07G267300 Glycine max HOM05D003857 ORTHO05D004454 1.2e-10 70.1 88 44.3
Phvul.006G056400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.5e-10 69.7 91 46.2
A01p40370 Brassica napus HOM05D003857 ORTHO05D004454 2.0e-10 69.3 90 46.7
BraA01t04072Z Brassica rapa HOM05D003857 ORTHO05D004454 2.0e-10 69.3 90 46.7
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.0e-10 69.3 88 40.9
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 2.6e-10 68.9 106 42.5
C01p51910 Brassica napus HOM05D003857 ORTHO05D004454 2.6e-10 68.9 90 45.6
Carub.0003s1252 Capsella rubella HOM05D003857 ORTHO05D004454 2.6e-10 68.9 91 42.9
Glyma.18G078100 Glycine max HOM05D003857 ORTHO05D004454 2.6e-10 68.9 84 52.4
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 2.6e-10 68.9 86 41.9
AT3G13175 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 3.4e-10 68.6 91 49.5
Haze_09813 Corylus avellana HOM05D003857 ORTHO05D004454 3.4e-10 68.6 83 51.8
Duzib192G0644 Durio zibethinus HOM05D003857 ORTHO05D004454 3.4e-10 68.6 82 45.1
BolC1t02594H Brassica oleracea HOM05D003857 ORTHO05D004454 4.5e-10 68.2 84 44.0
MBI19_g22178_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 4.5e-10 68.2 73 56.2
MD00G1056900 Malus domestica HOM05D003857 ORTHO05D004454 4.5e-10 68.2 85 42.4
Thhalv10022264m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 5.8e-10 67.8 90 45.6
C01p26490 Brassica napus HOM05D003857 ORTHO05D004454 1.0e-09 67.0 84 42.9
Lj4g0009185 Lotus japonicus HOM05D003857 ORTHO05D004454 1.0e-09 67.0 87 43.7
RcHm_v2.0_Chr5g0000661 Rosa chinensis HOM05D003857 ORTHO05D004454 1.0e-09 67.0 85 43.5
Sp3g11350 Schrenkiella parvula HOM05D003857 ORTHO05D004454 1.0e-09 67.0 90 45.6
Cpa.g.c35467.2 Carica papaya HOM05D003857 ORTHO05D004454 1.3e-09 66.6 86 45.3
Ciclev10017306m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.3e-09 66.6 83 45.8
arahy.Tifrunner.gnm1.ann1.QWC3QU Arachis hypogaea HOM05D003857 ORTHO05D004454 2.9e-09 65.5 82 43.9
arahy.Tifrunner.gnm1.ann1.Y3WDI1 Arachis hypogaea HOM05D003857 ORTHO05D004454 2.9e-09 65.5 82 43.9
CsaV3_3G004060 Cucumis sativus L. HOM05D003857 ORTHO05D004454 2.9e-09 65.5 82 48.8
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 3.8e-09 65.1 85 41.2
BolC5t34151H Brassica oleracea HOM05D003857 ORTHO05D004454 3.8e-09 65.1 89 43.8
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 3.8e-09 65.1 85 41.2
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 3.8e-09 65.1 90 41.1
C07p47840 Brassica napus HOM05D003857 ORTHO05D004454 4.9e-09 64.7 85 41.2
BolC7t45306H Brassica oleracea HOM05D003857 ORTHO05D004454 4.9e-09 64.7 85 41.2
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 4.9e-09 64.7 84 44.0
DCAR_030845 Daucus carota HOM05D003857 ORTHO05D004454 4.9e-09 64.7 84 42.9
Medtr5g095660 Medicago truncatula HOM05D003857 ORTHO05D004454 4.9e-09 64.7 83 42.2
Phvul.006G140400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 6.5e-09 64.3 86 41.9
TPR.G8580 Trifolium pratense HOM05D003857 ORTHO05D004454 6.5e-09 64.3 83 39.8
BcaC05g29205 Brassica carinata HOM05D003857 ORTHO05D004454 8.4e-09 63.9 90 43.3
C05p54780 Brassica napus HOM05D003857 ORTHO05D004454 8.4e-09 63.9 90 43.3
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 8.4e-09 63.9 84 42.9
Gohir.D06G162600 Gossypium hirsutum HOM05D003857 ORTHO05D004454 8.4e-09 63.9 82 43.9
Gorai.010G189800 Gossypium raimondii HOM05D003857 ORTHO05D004454 8.4e-09 63.9 82 43.9
Prupe.4G005500 Prunus persica HOM05D003857 ORTHO05D004454 8.4e-09 63.9 84 40.5
Rhsim04G0013000 Rhododendron simsii HOM05D003857 ORTHO05D004454 8.4e-09 63.9 95 41.1
Sabra16G0011900 Salix brachista HOM05D003857 ORTHO05D004454 8.4e-09 63.9 86 39.5
Sp7g14930 Schrenkiella parvula HOM05D003857 ORTHO05D004454 8.4e-09 63.9 85 41.2
BcaB06g25481 Brassica carinata HOM05D003857 ORTHO05D004454 1.1e-08 63.5 90 43.3
BcaNung00200 Brassica carinata HOM05D003857 ORTHO05D004454 1.1e-08 63.5 84 41.7
ClCG10G004230 Citrullus lanatus HOM05D003857 ORTHO05D004454 1.1e-08 63.5 83 48.2
ClCG10G004260 Citrullus lanatus HOM05D003857 ORTHO05D004454 1.1e-08 63.5 83 48.2
MELO3C026073.2 Cucumis melo HOM05D003857 ORTHO05D004454 1.1e-08 63.5 88 45.5
Phvul.008G278500 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.1e-08 63.5 85 44.7
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 1.4e-08 63.2 85 42.4
BcaC07g37984 Brassica carinata HOM05D003857 ORTHO05D004454 1.4e-08 63.2 84 41.7
BolC8t48365H Brassica oleracea HOM05D003857 ORTHO05D004454 1.4e-08 63.2 84 41.7
ClCG01G010960 Citrullus lanatus HOM05D003857 ORTHO05D004454 1.4e-08 63.2 88 44.3
Gohir.A06G156300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.4e-08 63.2 82 42.7
Sed0010782 Sechium edule HOM05D003857 ORTHO05D004454 1.9e-08 62.8 82 46.3
Aa31LG8G380 Aethionema arabicum HOM05D003857 ORTHO05D004454 2.5e-08 62.4 90 40.0
A05p36390 Brassica napus HOM05D003857 ORTHO05D004454 2.5e-08 62.4 90 42.2
BraA05t22439Z Brassica rapa HOM05D003857 ORTHO05D004454 2.5e-08 62.4 90 42.2
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 2.5e-08 62.4 85 42.4
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 2.5e-08 62.4 86 43.0
Nn1g03204 Nelumbo nucifera HOM05D003857 ORTHO05D004454 3.2e-08 62.0 85 47.1
Cc09_g00510 Coffea canephora HOM05D003857 ORTHO05D004454 4.2e-08 61.6 85 42.4
Actinidia35399 Actinidia chinensis HOM05D003857 ORTHO05D004454 5.5e-08 61.2 61 54.1
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 5.5e-08 61.2 85 41.2
BraA08t33236Z Brassica rapa HOM05D003857 ORTHO05D004454 5.5e-08 61.2 84 41.7
Migut.H01624 Erythranthe guttata HOM05D003857 ORTHO05D004454 5.5e-08 61.2 86 43.0
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 5.5e-08 61.2 87 39.1
THA.LOC104810291 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 5.5e-08 61.2 90 44.4
A01p21200 Brassica napus HOM05D003857 ORTHO05D004454 7.1e-08 60.8 84 41.7
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 9.3e-08 60.5 84 41.7
Glyma.02G299800 Glycine max HOM05D003857 ORTHO05D004454 9.3e-08 60.5 86 43.0
Atru.chr1.2307 Acer truncatum HOM05D003857 ORTHO05D004454 1.6e-07 59.7 86 40.7
LjContig00081g0000031 Lotus japonicus HOM05D003857 ORTHO05D004454 1.6e-07 59.7 85 38.8
CiPaw.09G107600 Carya illinoinensis HOM05D003857 ORTHO05D004454 2.1e-07 59.3 86 36.0
Hma1.2p1_0036F.1_g022470 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 2.1e-07 59.3 56 57.1
CsaV3_1G015520 Cucumis sativus L. HOM05D003857 ORTHO05D004454 2.7e-07 58.9 88 42.0
THA.LOC104815698 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 4.6e-07 58.2 102 40.2
FvH4_3g00490 Fragaria vesca HOM05D003857 ORTHO05D004454 6.0e-07 57.8 84 40.5
Sed0020326 Sechium edule HOM05D003857 ORTHO05D004454 6.0e-07 57.8 84 44.0
Glyma.17G006700 Glycine max HOM05D003857 ORTHO05D004454 1.0e-06 57.0 88 38.6
FAN25G3265 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.8e-06 56.2 86 38.4
BcaC09g50339 Brassica carinata HOM05D003857 ORTHO05D004454 6.7e-06 54.3 54 50.0
ATR0827G129 Amborella trichopoda HOM05D003857 ORTHO05D004454 8.7e-06 53.9 91 38.5


User provided reference genes

Program Settings