Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 4.1e-87 324.7 167 100.0
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 3.8e-72 275.0 167 88.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.5e-52 209.1 169 68.6
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 9.3e-47 190.7 162 60.5
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.8e-43 179.1 162 56.2
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 6.3e-43 177.9 162 56.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.1e-42 177.2 154 64.9
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.4e-42 176.8 162 55.6
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 2.4e-42 176.0 108 74.1
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.1e-42 175.6 155 61.3
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 3.1e-42 175.6 155 61.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 3.1e-42 175.6 162 56.2
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.1e-42 175.3 160 60.0
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 6.9e-42 174.5 144 57.6
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 6.9e-42 174.5 162 61.7
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 9.0e-42 174.1 162 60.5
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.2e-41 173.7 162 58.0
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 2.6e-41 172.6 156 59.0
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 4.5e-41 171.8 147 65.3
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 4.5e-41 171.8 147 65.3
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 4.5e-41 171.8 147 65.3
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 5.9e-41 171.4 171 59.1
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 7.6e-41 171.0 149 61.1
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 7.6e-41 171.0 154 57.8
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 2.2e-40 169.5 156 61.5
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 2.2e-40 169.5 162 59.3
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.2e-40 169.5 151 59.6
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 2.5e-39 166.0 147 57.1
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 2.5e-39 166.0 167 54.5
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 3.2e-39 165.6 167 53.9
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 3.2e-39 165.6 167 53.9
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 4.2e-39 165.2 150 58.0
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.2e-39 165.2 129 69.0
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 5.5e-39 164.9 151 58.9
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.2e-38 163.7 147 57.8
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-38 163.7 151 58.9
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.6e-38 163.3 155 55.5
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.1e-38 162.9 165 54.5
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 2.7e-38 162.5 159 55.3
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 2.7e-38 162.5 158 61.4
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 2.7e-38 162.5 135 60.0
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 4.6e-38 161.8 150 56.7
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 4.6e-38 161.8 105 72.4
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 6.1e-38 161.4 150 57.3
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 7.9e-38 161.0 159 55.3
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.0e-37 160.6 151 57.6
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.8e-37 159.8 155 54.2
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.8e-37 159.8 92 77.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.3e-37 159.5 156 59.6
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.3e-37 159.5 162 58.0
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.3e-37 159.5 146 61.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 2.3e-37 159.5 156 59.6
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.3e-37 159.5 103 71.8
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.0e-37 159.1 168 54.8
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 3.0e-37 159.1 145 60.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 3.9e-37 158.7 148 61.5
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.1e-37 158.3 155 58.7
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.1e-37 158.3 127 59.8
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 5.1e-37 158.3 162 55.6
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 5.1e-37 158.3 168 53.0
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 6.7e-37 157.9 162 57.4
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 8.8e-37 157.5 140 57.9
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 8.8e-37 157.5 170 52.9
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.1e-36 157.1 162 54.9
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.5e-36 156.8 169 52.7
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.9e-36 156.4 152 55.9
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 1.9e-36 156.4 129 63.6
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.9e-36 156.4 133 62.4
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.9e-36 156.4 133 58.6
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.5e-36 156.0 148 54.1
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 2.5e-36 156.0 145 62.1
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 2.5e-36 156.0 147 55.8
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.5e-36 156.0 164 51.8
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 3.3e-36 155.6 162 54.3
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 4.3e-36 155.2 165 58.8
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 4.3e-36 155.2 146 56.8
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 7.4e-36 154.5 163 55.2
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 7.4e-36 154.5 154 57.8
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.3e-35 153.7 145 56.6
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.3e-35 153.7 159 56.0
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.7e-35 153.3 163 53.4
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 4.8e-35 151.8 165 53.3
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 6.3e-35 151.4 163 54.0
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 8.2e-35 151.0 148 58.1
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.4e-34 150.2 170 53.5
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.8e-34 149.8 142 59.2
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.8e-34 149.8 141 57.4
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.4e-34 149.4 95 72.6
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.1e-34 149.1 170 49.4
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 6.9e-34 147.9 157 58.6
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 9.1e-34 147.5 103 70.9
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.5e-33 146.7 93 71.0
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 2.0e-33 146.4 86 76.7
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.6e-33 146.0 149 58.4
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 3.4e-33 145.6 107 63.6
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 4.5e-33 145.2 103 66.0
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 4.5e-33 145.2 130 61.5
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 5.9e-33 144.8 135 59.3
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 7.7e-33 144.4 90 72.2
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.0e-32 144.1 86 73.3
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 1.0e-32 144.1 149 57.7
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 2.9e-32 142.5 148 57.4
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.9e-32 142.5 148 57.4
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.9e-32 142.5 149 56.4
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.0e-32 141.7 149 55.7
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.1e-31 140.6 157 52.9
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.1e-31 140.6 133 59.4
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 9.4e-31 137.5 108 60.2
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.2e-30 137.1 167 47.3
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 6.1e-30 134.8 147 53.1
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.4e-29 133.7 108 58.3
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 2.3e-29 132.9 108 58.3
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 8.8e-29 131.0 79 75.9
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 4.4e-28 128.6 158 50.0
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 3.7e-27 125.6 116 54.3
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 4.8e-27 125.2 160 46.9
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 6.3e-27 124.8 101 60.4
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.8e-26 123.2 98 59.2
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 5.3e-26 121.7 263 37.3
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.2e-25 120.6 106 64.2
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.5e-25 120.2 157 47.8
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 7.7e-25 117.9 140 50.7
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 2.9e-24 115.9 99 66.7
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 8.5e-24 114.4 52 88.5
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 6.1e-22 108.2 85 63.5
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.4e-20 102.1 91 54.9
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 5.3e-18 95.1 120 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.6e-17 93.6 86 52.3
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 2.9e-16 89.4 84 58.3
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 5.0e-16 88.6 91 45.1
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.5e-15 87.0 118 41.5
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 3.2e-15 85.9 84 54.8
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 4.2e-15 85.5 173 37.6
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 9.4e-15 84.3 43 83.7
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 8.8e-13 77.8 84 59.5
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 4.4e-12 75.5 69 58.0
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.2e-09 67.4 130 35.4
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.0e-08 64.3 99 36.4
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 1.7e-08 63.5 39 69.2
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 3.8e-08 62.4 55 52.7
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 5.0e-08 62.0 57 52.6
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 8.5e-08 61.2 56 53.6


User provided reference genes

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