Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 3.4e-261 904.4 451 100.0
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 2.6e-208 728.8 453 81.7
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 2.6e-208 728.8 453 81.7
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 1.3e-199 699.9 454 78.4
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 1.2e-197 693.3 452 78.1
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.0e-189 666.0 459 74.3
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 4.6e-189 664.8 459 74.3
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 5.0e-188 661.4 450 76.2
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 1.2e-186 656.8 461 72.2
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 1.2e-186 656.8 461 72.9
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 1.4e-185 653.3 449 73.9
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 1.4e-185 653.3 458 73.6
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 3.1e-185 652.1 453 75.5
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 3.1e-185 652.1 428 77.8
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.5e-184 649.8 449 73.3
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 2.6e-184 649.0 457 73.1
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 1.3e-183 646.7 476 70.2
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.7e-183 646.4 461 72.7
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 3.7e-183 645.2 459 72.3
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 4.9e-183 644.8 455 73.0
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 8.3e-183 644.0 451 74.3
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.4e-182 643.3 459 71.9
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 1.4e-182 643.3 451 74.3
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 4.1e-182 641.7 458 72.9
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 4.1e-182 641.7 451 73.4
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.6e-181 639.8 428 75.9
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.6e-181 639.8 461 72.9
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 1.6e-181 639.8 460 71.7
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 2.1e-181 639.4 454 71.6
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 6.0e-181 637.9 428 75.5
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 7.8e-181 637.5 457 71.6
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 1.0e-180 637.1 388 81.7
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 1.0e-180 637.1 442 74.2
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.3e-180 636.7 455 72.3
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 2.3e-180 636.0 459 71.5
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.9e-180 635.2 452 71.0
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 3.9e-180 635.2 455 69.7
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 8.6e-180 634.0 450 72.0
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.1e-179 633.6 460 71.1
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 1.1e-179 633.6 457 70.0
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.1e-179 633.6 455 72.1
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.5e-179 633.3 456 70.8
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 1.9e-179 632.9 428 74.8
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 2.5e-179 632.5 455 71.9
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 2.5e-179 632.5 461 70.7
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 3.3e-179 632.1 461 70.7
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 4.3e-179 631.7 429 75.1
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 4.3e-179 631.7 388 80.7
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 4.3e-179 631.7 461 70.1
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 7.3e-179 630.9 456 70.6
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 7.3e-179 630.9 455 71.6
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 7.3e-179 630.9 402 77.6
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 1.6e-178 629.8 452 70.8
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 1.6e-178 629.8 459 71.5
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 1.6e-178 629.8 454 70.9
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 2.8e-178 629.0 437 73.7
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 3.6e-178 628.6 451 71.8
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 6.2e-178 627.9 460 71.3
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 8.1e-178 627.5 489 68.1
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.4e-177 626.7 445 71.0
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 1.5e-176 623.2 455 69.0
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 1.5e-176 623.2 453 71.3
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 1.5e-176 623.2 388 79.9
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 2.6e-176 622.5 457 70.7
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 5.8e-176 621.3 409 76.5
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 7.5e-176 620.9 454 70.5
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 9.9e-176 620.5 404 77.0
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 9.9e-176 620.5 388 79.6
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.3e-175 620.2 449 71.5
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 1.7e-175 619.8 432 71.8
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 2.2e-175 619.4 453 70.6
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 1.1e-174 617.1 427 74.5
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 4.1e-174 615.1 448 69.9
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 5.4e-174 614.8 467 69.0
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 2.7e-173 612.5 403 75.2
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 6.0e-173 611.3 409 75.3
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.3e-172 610.1 397 76.1
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.3e-172 610.1 405 75.8
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 3.0e-172 609.0 404 75.2
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 6.6e-172 607.8 387 77.0
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 6.6e-172 607.8 453 68.9
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 1.1e-171 607.1 388 77.3
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 1.1e-171 607.1 409 74.6
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 4.3e-171 605.1 390 76.4
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 5.6e-171 604.7 401 75.8
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 7.3e-171 604.4 458 68.1
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 7.3e-171 604.4 409 73.8
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.2e-170 603.6 388 77.6
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 6.2e-170 601.3 425 70.6
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 2.4e-169 599.4 392 75.3
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 4.0e-169 598.6 409 74.3
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 6.8e-169 597.8 401 74.8
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 6.8e-169 597.8 401 74.8
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 2.6e-168 595.9 462 67.3
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 3.4e-168 595.5 388 76.3
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 3.4e-168 595.5 388 76.3
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 4.4e-168 595.1 423 72.1
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 5.8e-168 594.7 388 75.8
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 1.3e-167 593.6 409 72.4
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 1.7e-167 593.2 467 67.0
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 3.8e-167 592.0 454 67.8
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 6.4e-167 591.3 444 68.2
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 8.4e-167 590.9 396 74.0
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 8.4e-167 590.9 396 74.0
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 3.2e-166 589.0 456 67.3
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 3.2e-166 589.0 468 67.5
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 2.7e-165 585.9 403 72.2
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 6.2e-162 574.7 452 66.8
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 8.1e-162 574.3 363 79.6
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 7.6e-160 567.8 410 71.2
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 4.3e-155 552.0 388 71.6
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.9e-150 536.6 396 69.7
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.3e-146 523.9 415 64.1
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 2.8e-146 522.7 426 63.1
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.0e-145 518.8 385 66.8
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 7.9e-141 504.6 532 54.3
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 1.6e-138 496.9 449 59.5
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 5.8e-136 488.4 372 67.2
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 4.9e-135 485.3 398 61.1
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 1.9e-131 473.4 339 71.7
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 3.1e-129 466.1 450 57.3
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 1.8e-121 440.3 375 58.1
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 6.5e-119 431.8 417 54.0
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 3.7e-114 416.0 281 75.1
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.2e-112 411.0 334 64.7
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 1.4e-108 397.5 322 65.5
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 9.1e-105 384.8 262 75.2
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 1.5e-99 367.5 288 63.2
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 2.9e-95 353.2 286 65.7
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 4.2e-94 349.4 436 48.4
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.5e-86 324.3 410 47.8
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.6e-80 304.3 204 74.0
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 4.3e-78 296.2 205 72.7
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.9e-74 283.5 169 82.2
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 1.0e-71 275.0 189 73.0
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 3.1e-68 263.5 204 69.1
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 3.1e-68 263.5 204 69.1
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 4.6e-56 223.0 157 72.0
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-56 222.2 141 75.2
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.1e-49 201.8 128 75.0
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.4e-49 200.7 150 66.0
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 9.0e-44 182.2 199 53.8
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.6e-37 161.4 210 49.0
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 3.4e-35 153.7 84 84.5
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.7e-34 151.4 135 59.3
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.8e-31 141.4 399 29.8
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 6.7e-31 139.4 89 74.2
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 6.2e-29 132.9 77 83.1
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.0e-27 127.9 114 58.8
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 1.4e-25 121.7 194 40.7
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.2e-25 120.2 173 42.8
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 4.0e-20 103.6 69 73.9
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 3.0e-15 87.4 50 82.0
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 1.4e-09 68.6 455 24.4
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 2.5e-09 67.8 319 26.6
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.6e-08 65.1 37 70.3
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 1.6e-08 65.1 376 22.9
Cpa.g.sc36.33 Carica papaya HOM05D002771 ORTHO05D003078 2.1e-08 64.7 276 22.5
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 2.1e-08 64.7 31 90.3
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 1.4e-07 62.0 256 25.8
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 1.8e-07 61.6 256 24.2
Lj1A20T48 Lonicera japonica HOM05D002771 ORTHO05D003078 2.3e-07 61.2 258 23.3
Phvul.009G122800 Phaseolus vulgaris HOM05D002771 ORTHO05D003078 3.0e-07 60.8 260 23.8
Haze_27183 Corylus avellana HOM05D003605 ORTHO05D004292 8.8e-07 59.3 384 22.4
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 2.5e-06 57.8 212 25.5
DCAR_012361 Daucus carota HOM05D002771 ORTHO05D003078 2.5e-06 57.8 256 22.7
CAN.G933.13 Capsicum annuum HOM05D002015 ORTHO05D017741 4.3e-06 57.0 57 49.1


User provided reference genes

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