Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04246 Striga asiatica HOM05D001690 ORTHO05D009096 2.2e-137 492.3 244 100.0
Migut.L01445 Erythranthe guttata HOM05D001690 ORTHO05D009096 7.2e-72 274.6 238 60.5
SalBow2G0686 Salvia bowleyana HOM05D001690 ORTHO05D009096 1.5e-66 256.9 204 63.7
SalBow2G2592 Salvia bowleyana HOM05D001690 ORTHO05D009096 1.5e-66 256.9 204 63.7
unitig_699.g19928 Utricularia gibba HOM05D001690 ORTHO05D009096 2.2e-65 253.1 195 65.1
Cpa.g.sc5.350 Carica papaya HOM05D001690 ORTHO05D009096 1.6e-63 246.9 190 62.1
MSTRG.621 Avicennia marina HOM05D001690 ORTHO05D009096 1.0e-62 244.2 187 66.3
PGSC0003DMG400015577 Solanum tuberosum HOM05D001690 ORTHO05D009096 3.9e-62 242.3 218 56.9
Sabra08G0111900 Salix brachista HOM05D001690 ORTHO05D009096 1.1e-61 240.7 208 59.6
vmacro01197 Vaccinium macrocarpon HOM05D001690 ORTHO05D009096 5.7e-61 238.4 252 53.2
Haze_12139 Corylus avellana HOM05D001690 ORTHO05D009096 9.7e-61 237.7 189 61.4
Cc11_g14250 Coffea canephora HOM05D001690 ORTHO05D009096 1.7e-60 236.9 169 66.3
Gohir.A03G142400 Gossypium hirsutum HOM05D001690 ORTHO05D009096 2.2e-60 236.5 187 61.5
Manes.01G196800 Manihot esculenta HOM05D001690 ORTHO05D009096 2.8e-60 236.1 226 55.3
FvH4_4g35000 Fragaria vesca HOM05D001690 ORTHO05D009096 4.8e-60 235.3 221 56.6
FAN12G1851 Fragaria x ananassa HOM05D001690 ORTHO05D009096 4.8e-60 235.3 221 56.6
Hma1.2p1_0160F.1_g070590 Hydrangea macrophylla HOM05D001690 ORTHO05D009096 6.3e-60 235.0 170 65.9
Lj3C1049G3 Lonicera japonica HOM05D001690 ORTHO05D009096 6.3e-60 235.0 202 59.4
Cfa009103 Carpinus fangiana HOM05D001690 ORTHO05D009096 8.2e-60 234.6 192 59.4
Peaxi162Scf00421g00710 Petunia axillaris HOM05D001690 ORTHO05D009096 8.2e-60 234.6 187 61.5
COL.COLO4_37898 Corchorus olitorius HOM05D001690 ORTHO05D002627 1.1e-59 234.2 193 59.6
Rhsim12G0050200 Rhododendron simsii HOM05D001690 ORTHO05D009096 1.1e-59 234.2 194 59.8
RcHm_v2.0_Chr4g0444521 Rosa chinensis HOM05D001690 ORTHO05D009096 1.4e-59 233.8 238 54.2
Ciclev10033984m.g Citrus clementina HOM05D001690 ORTHO05D009096 1.8e-59 233.4 189 60.8
Duzib248G1036 Durio zibethinus HOM05D001690 ORTHO05D009096 2.4e-59 233.0 203 57.6
FAN07G2318 Fragaria x ananassa HOM05D001690 ORTHO05D009096 3.1e-59 232.6 171 64.9
PGR119G1314 Punica granatum HOM05D001690 ORTHO05D009096 3.1e-59 232.6 212 56.6
DCAR_026553 Daucus carota HOM05D001690 ORTHO05D009096 4.1e-59 232.3 188 62.2
Sopen05g002120 Solanum pennellii HOM05D001690 ORTHO05D009096 4.1e-59 232.3 218 55.5
Aqoxy3G03080 Aquilegia oxysepala HOM05D001690 ORTHO05D009096 9.1e-59 231.1 175 64.6
FAN22G0616 Fragaria x ananassa HOM05D001690 ORTHO05D009096 1.2e-58 230.7 211 56.9
Gohir.D02G165700 Gossypium hirsutum HOM05D001690 ORTHO05D009096 1.2e-58 230.7 185 61.6
Gorai.005G185800 Gossypium raimondii HOM05D001690 ORTHO05D009096 1.2e-58 230.7 185 61.6
CAN.G1160.1 Capsicum annuum HOM05D001690 ORTHO05D009096 2.0e-58 229.9 213 58.7
Lalb_Chr09g0326501 Lupinus albus HOM05D001690 ORTHO05D009096 2.0e-58 229.9 217 55.8
CARHR024380 Cardamine hirsuta HOM05D001690 ORTHO05D009096 3.5e-58 229.2 200 58.5
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 4.5e-58 228.8 169 65.7
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 4.5e-58 228.8 173 62.4
Lsat_1_v5_gn_4_6521 Lactuca sativa HOM05D001690 ORTHO05D009096 4.5e-58 228.8 170 64.1
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 4.5e-58 228.8 188 58.5
Carub.0001s2353 Capsella rubella HOM05D001690 ORTHO05D009096 5.9e-58 228.4 190 60.0
Potri.008G147000 Populus trichocarpa HOM05D001690 ORTHO05D009096 5.9e-58 228.4 204 57.8
Thhalv10008745m.g Eutrema salsugineum HOM05D001690 ORTHO05D009096 7.7e-58 228.0 210 55.7
Atru.chr11.1963 Acer truncatum HOM05D001690 ORTHO05D009096 1.0e-57 227.6 187 62.0
BcaB07g32380 Brassica carinata HOM05D001690 ORTHO05D009096 1.0e-57 227.6 190 60.5
Aa31LG7G7870 Aethionema arabicum HOM05D001690 ORTHO05D009096 1.7e-57 226.9 212 57.5
QL03p062480 Quercus lobata HOM05D001690 ORTHO05D009096 1.7e-57 226.9 169 62.1
Actinidia08182 Actinidia chinensis HOM05D001690 ORTHO05D009096 2.2e-57 226.5 189 60.8
Thecc.02G242600 Theobroma cacao HOM05D001690 ORTHO05D009096 2.2e-57 226.5 249 51.4
Nitab4.5_0005722g0030 Nicotiana tabacum HOM05D001690 ORTHO05D009096 2.9e-57 226.1 254 52.4
TWI36G1443 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 3.8e-57 225.7 170 63.5
MD16G1087300 Malus domestica HOM05D001690 ORTHO05D009096 6.5e-57 224.9 171 64.9
AT1G24095 Arabidopsis thaliana HOM05D001690 ORTHO05D009096 8.5e-57 224.6 170 64.1
Lj2g0027896 Lotus japonicus HOM05D001690 ORTHO05D009096 8.5e-57 224.6 169 63.9
Prupe.1G259700 Prunus persica HOM05D001690 ORTHO05D009096 1.1e-56 224.2 173 63.6
BcaC05g26303 Brassica carinata HOM05D001690 ORTHO05D009096 1.5e-56 223.8 190 58.4
BolC5t31021H Brassica oleracea HOM05D001690 ORTHO05D009096 1.5e-56 223.8 190 58.4
HanXRQChr04g0103621 Helianthus annuus HOM05D001690 ORTHO05D009096 1.5e-56 223.8 190 57.9
arahy.Tifrunner.gnm1.ann1.00SZA6 Arachis hypogaea HOM05D001690 ORTHO05D009096 1.9e-56 223.4 169 65.1
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 2.5e-56 223.0 190 57.9
TWI18G1158 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 4.2e-56 222.2 170 62.9
AL1G37900 Arabidopsis lyrata HOM05D001690 ORTHO05D009096 7.2e-56 221.5 205 57.6
BraA09t39574Z Brassica rapa HOM05D001690 ORTHO05D009096 9.4e-56 221.1 190 58.4
THA.LOC109116916 Tarenaya hassleriana HOM05D001690 ORTHO05D009096 9.4e-56 221.1 178 60.7
Hund05955 Selenicereus undatus HOM05D001690 ORTHO05D009096 1.2e-55 220.7 174 60.9
MD13G1087000 Malus domestica HOM05D001690 ORTHO05D009096 1.6e-55 220.3 171 62.6
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.1e-55 219.9 190 57.9
Sp1g21410 Schrenkiella parvula HOM05D001690 ORTHO05D009096 2.1e-55 219.9 217 54.8
CSS0041586 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D009096 4.7e-55 218.8 123 82.1
MBI14_g12607_MAGBIO Magnolia biondii HOM05D001690 ORTHO05D009096 1.8e-54 216.9 130 76.2
Nitab4.5_0000257g0260 Nicotiana tabacum HOM05D001690 ORTHO05D009096 4.0e-54 215.7 242 52.9
Hund25316 Selenicereus undatus HOM05D001690 ORTHO05D009096 5.2e-54 215.3 171 60.2
Sc14g0008550 Simmondsia chinensis HOM05D001690 ORTHO05D009096 8.8e-54 214.5 175 59.4
AUR62026581 Chenopodium quinoa HOM05D001690 ORTHO05D009096 1.5e-53 213.8 171 61.4
Psat2g111480 Pisum sativum HOM05D001690 ORTHO05D009096 1.5e-53 213.8 162 63.6
Dinv30998 Davidia involucrata HOM05D001690 ORTHO05D009096 2.6e-53 213.0 124 77.4
Dinv31105 Davidia involucrata HOM05D001690 ORTHO05D009096 2.6e-53 213.0 124 77.4
Zm00001eb371950 Zea mays HOM05D001690 ORTHO05D009096 2.6e-53 213.0 197 52.3
CANSAT35G0663 Cannabis sativa HOM05D001690 ORTHO05D009096 3.3e-53 212.6 215 52.6
ClCG05G025030 Citrullus lanatus HOM05D001690 ORTHO05D009096 4.4e-53 212.2 235 51.1
CiPaw.06G074800 Carya illinoinensis HOM05D001690 ORTHO05D009096 5.7e-53 211.8 126 76.2
AUR62039406 Chenopodium quinoa HOM05D001690 ORTHO05D009096 5.7e-53 211.8 171 61.4
Sed0019838 Sechium edule HOM05D001690 ORTHO05D009096 5.7e-53 211.8 228 51.3
Ah.03g132370 Amaranthus hybridus HOM05D000337 ORTHO05D000297 1.7e-52 210.3 172 59.9
CDE04G3384 Ceratophyllum demersum HOM05D001690 ORTHO05D009096 1.7e-52 210.3 212 50.9
CANSAT25G2126 Cannabis sativa HOM05D001690 ORTHO05D009096 2.2e-52 209.9 215 52.1
GSVIVG01020171001 Vitis vinifera HOM05D001690 ORTHO05D009096 8.2e-52 208.0 126 79.4
CsaV3_5G031860 Cucumis sativus L. HOM05D001690 ORTHO05D009096 2.4e-51 206.5 171 59.6
SEGI_04544 Sequoiadendron giganteum HOM05D001690 ORTHO05D009096 2.0e-50 203.4 169 57.4
HPP92_017336 Vanilla planifolia HOM05D001690 ORTHO05D009096 2.7e-50 203.0 177 53.7
Glyma.02G037900 Glycine max HOM05D001690 ORTHO05D009096 3.5e-50 202.6 172 58.7
TPR.G13490 Trifolium pratense HOM05D001690 ORTHO05D009096 4.5e-50 202.2 124 75.0
VMungo1215G1997 Vigna mungo HOM05D001690 ORTHO05D009096 1.0e-49 201.1 175 56.0
Medtr5g035310 Medicago truncatula HOM05D001690 ORTHO05D009096 8.5e-49 198.0 142 66.2
PSO063G0131 Papaver somniferum HOM05D001690 ORTHO05D009096 9.4e-48 194.5 205 51.2
PSO832G0212 Papaver somniferum HOM05D001690 ORTHO05D009096 1.6e-47 193.7 235 46.0
vmacro12906 Vaccinium macrocarpon HOM05D001690 ORTHO05D009096 6.1e-47 191.8 141 64.5
EL10Ac6g13729 Beta vulgaris HOM05D001690 ORTHO05D009096 1.2e-45 187.6 217 49.8
Pp3c10_1390 Physcomitrium patens HOM05D001690 ORTHO05D009096 1.4e-43 180.6 171 50.3
SMO147G0177 Selaginella moellendorffii HOM05D001690 ORTHO05D009096 1.8e-43 180.3 176 54.5
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.2e-40 169.1 140 58.6
CBR_g38731 Chara braunii HOM05D001690 ORTHO05D009096 2.3e-38 163.3 172 45.3
Phvul.002G059700 Phaseolus vulgaris HOM05D001690 ORTHO05D009096 1.2e-37 161.0 175 49.7
Psat2g111840 Pisum sativum HOM05D000009 ORTHO05D000008 1.4e-35 154.1 127 60.6
EL10Ac9g21122 Beta vulgaris HOM05D001690 ORTHO05D009096 3.8e-33 146.0 99 66.7
Nn4g22883 Nelumbo nucifera HOM05D001690 ORTHO05D009096 4.1e-27 125.9 121 54.5
Solyc05g006100.4 Solanum lycopersicum HOM05D001690 ORTHO05D009096 3.9e-25 119.4 218 37.2
EL10Ac5g10984 Beta vulgaris HOM05D001690 ORTHO05D009096 7.3e-24 115.2 111 55.9
MELO3C012024.2 Cucumis melo HOM05D001690 ORTHO05D009096 1.1e-22 111.3 110 48.2
EL10Ac6g14125 Beta vulgaris HOM05D001690 ORTHO05D009096 6.4e-20 102.1 70 71.4
CSS0030261 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D009096 2.7e-18 96.7 60 71.7
EL10Ac5g11364 Beta vulgaris HOM05D001690 ORTHO05D009096 9.5e-16 88.2 57 70.2
BcaC05g26305 Brassica carinata HOM05D001690 ORTHO05D009096 4.4e-13 79.3 45 75.6
SMO266G0086 Selaginella moellendorffii HOM05D006629 ORTHO05D008430 4.9e-12 75.9 155 31.6
Nn8g39443 Nelumbo nucifera HOM05D006629 ORTHO05D008430 2.4e-11 73.6 142 31.0
HanXRQChr03g0073251 Helianthus annuus HOM05D001690 ORTHO05D009096 4.1e-11 72.8 77 46.8
PGR102G3125 Punica granatum HOM05D006629 ORTHO05D008430 4.1e-11 72.8 142 31.7
Lj5C70G0 Lonicera japonica HOM05D006629 ORTHO05D008430 5.4e-11 72.4 142 29.6
DCAR_025501 Daucus carota HOM05D006629 ORTHO05D008430 9.2e-11 71.6 142 28.9
ATR0322G059 Amborella trichopoda HOM05D006629 ORTHO05D008430 1.2e-10 71.2 151 29.1
Migut.I00787 Erythranthe guttata HOM05D006629 ORTHO05D008430 1.2e-10 71.2 142 30.3
Rhsim08G0214800 Rhododendron simsii HOM05D006629 ORTHO05D008430 1.2e-10 71.2 142 31.0
Aa31LG10G2420 Aethionema arabicum HOM05D006629 ORTHO05D008430 1.6e-10 70.9 182 29.1
CSS0009902 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 1.6e-10 70.9 142 31.0
AT1G52590 Arabidopsis thaliana HOM05D006629 ORTHO05D008430 2.7e-10 70.1 142 30.3
Ciclev10026597m.g Citrus clementina HOM05D006629 ORTHO05D008430 2.7e-10 70.1 142 30.3
QL05p028345 Quercus lobata HOM05D006629 ORTHO05D008430 3.5e-10 69.7 142 30.3
Oeu052266.1 Olea europaea HOM05D006629 ORTHO05D008430 4.6e-10 69.3 142 31.0
Hund00536 Selenicereus undatus HOM05D006629 ORTHO05D008430 4.6e-10 69.3 142 31.0
THA.LOC104818030 Tarenaya hassleriana HOM05D006629 ORTHO05D008430 4.6e-10 69.3 142 29.6
AL1G60870 Arabidopsis lyrata HOM05D006629 ORTHO05D008430 6.0e-10 68.9 142 29.6
Thecc.06G069100 Theobroma cacao HOM05D006629 ORTHO05D008430 6.0e-10 68.9 142 31.0
Carub.0001s4159 Capsella rubella HOM05D006629 ORTHO05D008430 7.8e-10 68.6 142 29.6
C03p90690 Brassica napus HOM05D006629 ORTHO05D008430 1.0e-09 68.2 142 30.3
MSTRG.11130 Avicennia marina HOM05D006629 ORTHO05D008430 1.3e-09 67.8 142 29.6
Thhalv10011823m.g Eutrema salsugineum HOM05D006629 ORTHO05D008430 1.3e-09 67.8 142 29.6
Sp1g39150 Schrenkiella parvula HOM05D006629 ORTHO05D008430 1.3e-09 67.8 142 30.3
A08p02130 Brassica napus HOM05D006629 ORTHO05D008430 1.7e-09 67.4 142 30.3
BraA08t32260Z Brassica rapa HOM05D006629 ORTHO05D008430 1.7e-09 67.4 142 30.3
CSS0049498 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 1.7e-09 67.4 140 30.0
BcaC01g01330 Brassica carinata HOM05D006629 ORTHO05D008430 2.3e-09 67.0 142 30.3
BolC3t21390H Brassica oleracea HOM05D006629 ORTHO05D008430 2.3e-09 67.0 142 30.3
CARHR042720 Cardamine hirsuta HOM05D006629 ORTHO05D008430 2.3e-09 67.0 142 29.6
Rhsim04G0187300 Rhododendron simsii HOM05D006629 ORTHO05D008430 2.3e-09 67.0 142 29.6
SalBow2G3434 Salvia bowleyana HOM05D006629 ORTHO05D008430 2.3e-09 67.0 142 28.2
Eucgr.F02111 Eucalyptus grandis HOM05D006629 ORTHO05D008430 3.0e-09 66.6 142 29.6
Eucgr.F02534 Eucalyptus grandis HOM05D006629 ORTHO05D008430 3.0e-09 66.6 142 29.6
HPP92_021817 Vanilla planifolia HOM05D006629 ORTHO05D008430 3.0e-09 66.6 140 29.3
SGA_v2.0_scaffold5G02676 Striga asiatica HOM05D006629 ORTHO05D008430 3.9e-09 66.2 142 28.2
unitig_52.g17452 Utricularia gibba HOM05D006629 ORTHO05D008430 1.1e-08 64.7 142 29.6
PSO017G2975 Papaver somniferum HOM05D006629 ORTHO05D008430 1.9e-08 63.9 142 28.9
Peaxi162Scf00332g00758 Petunia axillaris HOM05D006629 ORTHO05D008430 5.6e-08 62.4 104 36.5
CDE06G1467 Ceratophyllum demersum HOM05D006629 ORTHO05D008430 2.1e-07 60.5 140 27.9
AUR62016355 Chenopodium quinoa HOM05D006629 ORTHO05D008430 3.6e-07 59.7 104 33.7
Pp3c1_15690 Physcomitrium patens HOM05D006629 ORTHO05D008430 6.2e-07 58.9 155 27.1
Cre14.g622750 Chlamydomonas reinhardtii HOM05D006629 ORTHO05D008430 1.1e-06 58.2 155 29.0
PSO170G1412 Papaver somniferum HOM05D006629 ORTHO05D008430 1.4e-06 57.8 148 29.7
MCO16G483 Micromonas commoda HOM05D006629 ORTHO05D008430 3.1e-06 56.6 144 27.8
PRCOL_00001525 Prasinoderma coloniale HOM05D006629 ORTHO05D008430 3.1e-06 56.6 148 24.3


User provided reference genes

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