Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27590 Striga asiatica HOM05D000681 ORTHO05D009793 1.8e-99 365.9 183 100.0
SGA_v2.0_scaffold263G45971 Striga asiatica HOM05D000681 ORTHO05D003832 2.5e-13 79.7 47 87.2
Sed0020629 Sechium edule HOM05D000681 ORTHO05D003832 4.3e-13 79.0 47 87.2
Duzib170G1139 Durio zibethinus HOM05D000681 ORTHO05D003832 5.7e-13 78.6 47 85.1
MBI18_g10202_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D003832 5.7e-13 78.6 47 85.1
Thecc.09G348400 Theobroma cacao HOM05D000681 ORTHO05D003832 5.7e-13 78.6 47 85.1
VMungo1127G1979 Vigna mungo HOM05D000681 ORTHO05D003832 5.7e-13 78.6 48 83.3
ClCG02G021420 Citrullus lanatus HOM05D000681 ORTHO05D003832 7.4e-13 78.2 47 85.1
Potri.004G214300 Populus trichocarpa HOM05D000681 ORTHO05D003832 7.4e-13 78.2 47 85.1
Potri.009G007800 Populus trichocarpa HOM05D000681 ORTHO05D003832 7.4e-13 78.2 47 85.1
Glyma.11G194700 Glycine max HOM05D000681 ORTHO05D003832 9.7e-13 77.8 47 83.0
HPP92_007170 Vanilla planifolia HOM05D000681 ORTHO05D003832 9.7e-13 77.8 47 83.0
Glyma.12G079400 Glycine max HOM05D000681 ORTHO05D003832 1.3e-12 77.4 47 83.0
PGR119G2433 Punica granatum HOM05D000681 ORTHO05D003832 1.3e-12 77.4 47 83.0
VMungo1080G0320 Vigna mungo HOM05D000681 ORTHO05D003832 1.3e-12 77.4 47 83.0
Actinidia03701 Actinidia chinensis HOM05D000681 ORTHO05D003832 1.6e-12 77.0 47 83.0
COL.COLO4_03695 Corchorus olitorius HOM05D000681 ORTHO05D003832 1.6e-12 77.0 47 83.0
Lj3g0004561 Lotus japonicus HOM05D000681 ORTHO05D003832 1.6e-12 77.0 47 80.9
Lj3g0012170 Lotus japonicus HOM05D000681 ORTHO05D003832 1.6e-12 77.0 47 83.0
TWI79G0788 Tripterygium wilfordii HOM05D000681 ORTHO05D003832 1.6e-12 77.0 47 83.0
TAR623G0120 Trochodendron aralioides HOM05D000681 ORTHO05D003832 1.6e-12 77.0 47 83.0
unitig_0.g1501 Utricularia gibba HOM05D000681 ORTHO05D003832 1.6e-12 77.0 47 83.0
CSS0012981 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 80.9
MELO3C026913.2 Cucumis melo HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
CsaV3_6G014210 Cucumis sativus L. HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
Duzib168G2345 Durio zibethinus HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
Eucgr.J00895 Eucalyptus grandis HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
Gohir.A03G030700 Gossypium hirsutum HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
Gohir.A03G030800 Gossypium hirsutum HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
Gohir.D03G137700 Gossypium hirsutum HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
Oeu018373.1 Olea europaea HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
Peaxi162Scf00351g00524 Petunia axillaris HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 80.9
Sabra04G0145400 Salix brachista HOM05D000681 ORTHO05D003832 2.2e-12 76.6 47 83.0
Actinidia20435 Actinidia chinensis HOM05D000681 ORTHO05D003832 2.8e-12 76.3 47 80.9
Glyma.12G177500 Glycine max HOM05D000681 ORTHO05D003832 2.8e-12 76.3 47 80.9
Nn2g11596 Nelumbo nucifera HOM05D000681 ORTHO05D003832 2.8e-12 76.3 47 80.9
GSVIVG01031505001 Vitis vinifera HOM05D000681 ORTHO05D003832 2.8e-12 76.3 47 83.0
Aqoxy1G01160 Aquilegia oxysepala HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
CSS0028979 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
Cc01_g10540 Coffea canephora HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
PSO339G3985 Papaver somniferum HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
PSO801G0358 Papaver somniferum HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
Phvul.005G131600 Phaseolus vulgaris HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
Rhsim01G0212100 Rhododendron simsii HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
unitig_747.g21977 Utricularia gibba HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
vmacro14408 Vaccinium macrocarpon HOM05D000681 ORTHO05D003832 3.7e-12 75.9 47 80.9
arahy.Tifrunner.gnm1.ann1.423KP5 Arachis hypogaea HOM05D000681 ORTHO05D003832 4.8e-12 75.5 47 80.9
arahy.Tifrunner.gnm1.ann1.LC1BIY Arachis hypogaea HOM05D000681 ORTHO05D003832 4.8e-12 75.5 47 80.9
Duzib150G1516 Durio zibethinus HOM05D000681 ORTHO05D003832 4.8e-12 75.5 46 82.6
Glyma.13G323200 Glycine max HOM05D000681 ORTHO05D003832 4.8e-12 75.5 47 80.9
Cpa.g.sc1.26 Carica papaya HOM05D000681 ORTHO05D003832 6.3e-12 75.1 47 78.7
Ca_19302_v3 Cicer arietinum L. HOM05D000681 ORTHO05D003832 6.3e-12 75.1 47 80.9
Lj2C1015T1 Lonicera japonica HOM05D000681 ORTHO05D003832 6.3e-12 75.1 47 80.9
Hund08172 Selenicereus undatus HOM05D000681 ORTHO05D003832 6.3e-12 75.1 47 78.7
SEGI_39789 Sequoiadendron giganteum HOM05D000681 ORTHO05D003832 6.3e-12 75.1 47 78.7
TWI75G1365 Tripterygium wilfordii HOM05D000681 ORTHO05D003832 6.3e-12 75.1 47 80.9
TAR633G0086 Trochodendron aralioides HOM05D000681 ORTHO05D003832 6.3e-12 75.1 47 80.9
arahy.Tifrunner.gnm1.ann1.EX28K6 Arachis hypogaea HOM05D000681 ORTHO05D003832 8.2e-12 74.7 47 78.7
CDE10G0949 Ceratophyllum demersum HOM05D000681 ORTHO05D003832 8.2e-12 74.7 47 78.7
Ciclev10028056m.g Citrus clementina HOM05D000681 ORTHO05D003832 8.2e-12 74.7 46 82.6
MD11G1145400 Malus domestica HOM05D000681 ORTHO05D003832 8.2e-12 74.7 47 78.7
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 8.2e-12 74.7 47 80.9
Nitab4.5_0002033g0050 Nicotiana tabacum HOM05D000681 ORTHO05D003832 8.2e-12 74.7 47 78.7
Nitab4.5_0002186g0080 Nicotiana tabacum HOM05D000681 ORTHO05D003832 8.2e-12 74.7 47 78.7
PSO063G4170 Papaver somniferum HOM05D000681 ORTHO05D003832 8.2e-12 74.7 48 77.1
PSO339G2583 Papaver somniferum HOM05D000681 ORTHO05D003832 8.2e-12 74.7 48 77.1
MSTRG.18686 Avicennia marina HOM05D000681 ORTHO05D003832 1.1e-11 74.3 47 80.9
MSTRG.21097 Avicennia marina HOM05D000681 ORTHO05D003832 1.1e-11 74.3 47 78.7
CDE10G0078 Ceratophyllum demersum HOM05D000681 ORTHO05D003832 1.1e-11 74.3 47 78.7
Dinv29357 Davidia involucrata HOM05D000681 ORTHO05D003832 1.1e-11 74.3 47 78.7
Gohir.D03G137600 Gossypium hirsutum HOM05D000681 ORTHO05D003832 1.1e-11 74.3 47 80.9
THA.LOC104810871 Tarenaya hassleriana HOM05D000681 ORTHO05D003832 1.1e-11 74.3 47 78.7
Cfa010343 Carpinus fangiana HOM05D000681 ORTHO05D003832 1.4e-11 73.9 47 78.7
Haze_23749 Corylus avellana HOM05D000681 ORTHO05D003832 1.4e-11 73.9 47 78.7
DCAR_028348 Daucus carota HOM05D000681 ORTHO05D003832 1.4e-11 73.9 47 76.6
Phvul.011G084000 Phaseolus vulgaris HOM05D000681 ORTHO05D003832 1.4e-11 73.9 47 78.7
Hund08168 Selenicereus undatus HOM05D000681 ORTHO05D003832 1.4e-11 73.9 47 78.7
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.8e-11 73.6 47 78.7
Medtr2g095440 Medicago truncatula HOM05D000681 ORTHO05D003832 1.8e-11 73.6 46 80.4
PSO729G0145 Papaver somniferum HOM05D000681 ORTHO05D003832 1.8e-11 73.6 48 75.0
Prupe.6G108600 Prunus persica HOM05D000681 ORTHO05D003832 1.8e-11 73.6 47 76.6
SalBow3G2382 Salvia bowleyana HOM05D000681 ORTHO05D003832 1.8e-11 73.6 47 78.7
TPR.G11623 Trifolium pratense HOM05D000681 ORTHO05D003832 1.8e-11 73.6 46 80.4
FvH4_3g31100 Fragaria vesca HOM05D000681 ORTHO05D003832 2.4e-11 73.2 47 76.6
FAN11G1944 Fragaria x ananassa HOM05D000681 ORTHO05D003832 2.4e-11 73.2 47 76.6
FAN16G2718 Fragaria x ananassa HOM05D000681 ORTHO05D003832 2.4e-11 73.2 47 76.6
FAN21G1409 Fragaria x ananassa HOM05D000681 ORTHO05D003832 2.4e-11 73.2 47 76.6
FAN25G0771 Fragaria x ananassa HOM05D000681 ORTHO05D003832 2.4e-11 73.2 47 76.6
ATR1132G076 Amborella trichopoda HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 74.5
CAN.G1755.7 Capsicum annuum HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
CAN.G546.9 Capsicum annuum HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
CiPaw.13G118800 Carya illinoinensis HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Migut.D02261 Erythranthe guttata HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 78.7
Gohir.A13G232450 Gossypium hirsutum HOM05D012498 ORTHO05D015663 3.1e-11 72.8 47 78.7
Manes.15G173400 Manihot esculenta HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Nitab4.5_0000106g0430 Nicotiana tabacum HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Nitab4.5_0002044g0020 Nicotiana tabacum HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Peaxi162Scf01159g00229 Petunia axillaris HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Psat0s1250g0080 Pisum sativum HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Sc06g0010940 Simmondsia chinensis HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Sc06g0010970 Simmondsia chinensis HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Solyc06g074940.4 Solanum lycopersicum HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Sopen06g031340 Solanum pennellii HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
PGSC0003DMG400007141 Solanum tuberosum HOM05D000681 ORTHO05D003832 3.1e-11 72.8 47 76.6
Ah.01g003230 Amaranthus hybridus HOM05D000681 ORTHO05D003832 4.1e-11 72.4 47 76.6
Ca_01376_v3 Cicer arietinum L. HOM05D000681 ORTHO05D003832 4.1e-11 72.4 46 78.3
Lsat_1_v5_gn_1_62940 Lactuca sativa HOM05D000681 ORTHO05D003832 4.1e-11 72.4 46 78.3
Medtr4g057795 Medicago truncatula HOM05D000681 ORTHO05D003832 4.1e-11 72.4 47 76.6
Psat0s3241g0080 Pisum sativum HOM05D000681 ORTHO05D003832 4.1e-11 72.4 46 78.3
RcHm_v2.0_Chr5g0057741 Rosa chinensis HOM05D000681 ORTHO05D003832 4.1e-11 72.4 47 74.5
Aqoxy2G01771 Aquilegia oxysepala HOM05D000681 ORTHO05D003832 5.3e-11 72.0 47 76.6
QL01p015841 Quercus lobata HOM05D000681 ORTHO05D003832 5.3e-11 72.0 47 74.5
PGSC0003DMG400008119 Solanum tuberosum HOM05D000681 ORTHO05D003832 5.3e-11 72.0 47 74.5
vmacro03270 Vaccinium macrocarpon HOM05D000681 ORTHO05D003832 5.3e-11 72.0 47 74.5
HanXRQChr02g0055441 Helianthus annuus HOM05D000681 ORTHO05D003832 6.9e-11 71.6 46 78.3
Lsat_1_v5_gn_6_43741 Lactuca sativa HOM05D000681 ORTHO05D003832 6.9e-11 71.6 47 76.6
Solyc11g069090.2 Solanum lycopersicum HOM05D000681 ORTHO05D003832 6.9e-11 71.6 47 74.5
Sopen11g027810 Solanum pennellii HOM05D000681 ORTHO05D003832 6.9e-11 71.6 47 74.5
Atru.chr3.3548 Acer truncatum HOM05D000681 ORTHO05D003832 9.0e-11 71.2 47 74.5
arahy.Tifrunner.gnm1.ann1.XKH52J Arachis hypogaea HOM05D000681 ORTHO05D003832 9.0e-11 71.2 47 76.6
Lalb_Chr14g0374491 Lupinus albus HOM05D000681 ORTHO05D003832 9.0e-11 71.2 47 72.3
MD00G1033600 Malus domestica HOM05D000681 ORTHO05D003832 9.0e-11 71.2 47 74.5
Rhsim13G0098900 Rhododendron simsii HOM05D000681 ORTHO05D003832 9.0e-11 71.2 47 72.3
Sabra09G0004500 Salix brachista HOM05D000681 ORTHO05D003832 9.0e-11 71.2 46 78.3
Zm00001eb133140 Zea mays HOM05D000681 ORTHO05D003832 9.0e-11 71.2 47 72.3
Aa31LG1G12740 Aethionema arabicum HOM05D000681 ORTHO05D003832 1.2e-10 70.9 47 74.5
HanXRQChr13g0396591 Helianthus annuus HOM05D000681 ORTHO05D003832 1.2e-10 70.9 47 76.6
Ah.01g014200 Amaranthus hybridus HOM05D000681 ORTHO05D003832 1.5e-10 70.5 47 74.5
CANSAT54G0821 Cannabis sativa HOM05D000681 ORTHO05D003832 1.5e-10 70.5 47 72.3
Lalb_Chr22g0350351 Lupinus albus HOM05D000681 ORTHO05D003832 1.5e-10 70.5 47 72.3
Zm00001eb408960 Zea mays HOM05D000681 ORTHO05D003832 1.5e-10 70.5 47 72.3
Dinv34704 Davidia involucrata HOM05D000681 ORTHO05D003832 2.0e-10 70.1 47 74.5
ECA248G1494 Erigeron canadensis HOM05D000681 ORTHO05D003832 2.0e-10 70.1 46 76.1
EL10Ac9g22574 Beta vulgaris HOM05D000681 ORTHO05D003832 2.6e-10 69.7 46 73.9
Os09g0572400 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D003832 2.6e-10 69.7 47 74.5
BcaB01g04672 Brassica carinata HOM05D000681 ORTHO05D003832 3.4e-10 69.3 46 73.9
BcaB01g04673 Brassica carinata HOM05D000681 ORTHO05D003832 3.4e-10 69.3 46 73.9
BcaB01g04675 Brassica carinata HOM05D000681 ORTHO05D003832 3.4e-10 69.3 46 73.9
CARHR274470 Cardamine hirsuta HOM05D000681 ORTHO05D003832 4.5e-10 68.9 47 68.1
Os08g0564100 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D003832 4.5e-10 68.9 47 72.3
Thhalv10012937m.g Eutrema salsugineum HOM05D000681 ORTHO05D003832 5.9e-10 68.6 46 71.7
BcaC01g06554 Brassica carinata HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
BcaC03g18504 Brassica carinata HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
A02p03670 Brassica napus HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
A03p11030 Brassica napus HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
C02p08470 Brassica napus HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
C03p12710 Brassica napus HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
BolC2t06764H Brassica oleracea HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
BolC3t13737H Brassica oleracea HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
BraA02t05335Z Brassica rapa HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
BraA03t10417Z Brassica rapa HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
Sp6g22370 Schrenkiella parvula HOM05D000681 ORTHO05D003832 7.7e-10 68.2 46 71.7
AL8G37380 Arabidopsis lyrata HOM05D000681 ORTHO05D003832 1.0e-09 67.8 46 69.6
Carub.0008s2147 Capsella rubella HOM05D000681 ORTHO05D003832 1.0e-09 67.8 46 69.6
AUR62014924 Chenopodium quinoa HOM05D000681 ORTHO05D003832 1.0e-09 67.8 46 71.7
SHI06255 Sapria himalayana HOM05D000681 ORTHO05D003832 1.0e-09 67.8 46 73.9
AUR62029212 Chenopodium quinoa HOM05D000681 ORTHO05D003832 1.3e-09 67.4 46 71.7
ECA233G4245 Erigeron canadensis HOM05D000681 ORTHO05D003832 1.7e-09 67.0 47 70.2
SMO196G0229 Selaginella moellendorffii HOM05D000681 ORTHO05D003832 3.8e-09 65.9 47 66.0
Pp3c5_11340 Physcomitrium patens HOM05D000681 ORTHO05D003832 5.0e-09 65.5 47 68.1
SGA_v2.0_scaffold20G09258 Striga asiatica HOM05D008113 ORTHO05D009793 5.0e-09 65.5 48 66.7
AT5G60790 Arabidopsis thaliana HOM05D000681 ORTHO05D003832 8.5e-09 64.7 46 67.4
AagrBONN_evm.TU.Sc2ySwM_369.380 Anthoceros agrestis HOM05D000681 ORTHO05D003832 1.9e-08 63.5 47 63.8
CAN.G560.1 Capsicum annuum HOM05D000681 ORTHO05D003832 1.9e-08 63.5 46 69.6
Mapoly0038s0051 Marchantia polymorpha HOM05D000681 ORTHO05D003832 1.9e-08 63.5 47 66.0
Pp3c2_12550 Physcomitrium patens HOM05D000681 ORTHO05D003832 1.9e-08 63.5 47 66.0
MSTRG.1985 Avicennia marina HOM05D008113 ORTHO05D009793 2.5e-08 63.2 60 50.0
Pp3c1_33790 Physcomitrium patens HOM05D000681 ORTHO05D003832 4.2e-08 62.4 47 63.8
Oeu004789.2 Olea europaea HOM05D000681 ORTHO05D003832 2.1e-07 60.1 38 81.6
Migut.E00933 Erythranthe guttata HOM05D008113 ORTHO05D009793 4.6e-07 58.9 94 40.4
CSS0012952 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 6.7e-06 55.1 60 43.3
CSS0027769 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 6.7e-06 55.1 60 43.3
COL.COLO4_31999 Corchorus olitorius HOM05D000681 ORTHO05D003832 6.7e-06 55.1 38 71.1


User provided reference genes

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