Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 1.4e-93 346.3 175 100.0
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 1.3e-27 127.1 207 47.3
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 1.2e-25 120.6 215 42.3
Migut.N00134 Erythranthe guttata HOM05D001921 ORTHO05D001784 2.3e-24 116.3 184 45.7
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 1.2e-23 114.0 206 44.2
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.4e-21 107.1 186 44.1
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.1e-21 105.5 186 44.6
SalBow5G1185 Salvia bowleyana HOM05D001921 ORTHO05D001784 2.1e-20 103.2 182 42.3
SalBow5G3126 Salvia bowleyana HOM05D001921 ORTHO05D001784 2.1e-20 103.2 182 42.3
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 3.5e-20 102.4 194 42.3
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 1.0e-19 100.9 194 41.8
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 2.3e-19 99.8 210 41.0
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 2.3e-19 99.8 209 39.7
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 5.1e-19 98.6 194 41.8
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 8.6e-19 97.8 186 44.6
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 1.1e-18 97.4 213 40.8
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 2.5e-18 96.3 208 39.9
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 3.3e-18 95.9 204 43.1
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 3.3e-18 95.9 213 41.3
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 3.3e-18 95.9 181 44.2
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 5.6e-18 95.1 192 39.6
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.1e-17 93.2 205 42.9
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 2.1e-17 93.2 185 43.8
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 6.2e-17 91.7 199 41.7
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 1.4e-16 90.5 212 38.2
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 1.8e-16 90.1 190 41.1
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 3.1e-16 89.4 204 42.2
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 5.2e-16 88.6 210 39.5
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 5.2e-16 88.6 199 41.2
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.8e-16 88.2 188 42.0
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 6.8e-16 88.2 188 41.5
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 8.9e-16 87.8 205 35.6
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 8.9e-16 87.8 218 38.5
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 8.9e-16 87.8 209 39.2
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 8.9e-16 87.8 227 38.8
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 1.2e-15 87.4 196 39.3
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.2e-15 87.4 193 43.0
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 1.5e-15 87.0 186 43.0
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 2.0e-15 86.7 217 34.1
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 2.0e-15 86.7 194 40.7
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 2.0e-15 86.7 199 39.7
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 2.0e-15 86.7 199 39.7
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 2.0e-15 86.7 196 41.8
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 2.6e-15 86.3 202 40.1
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 3.4e-15 85.9 195 40.0
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.4e-15 85.9 185 40.0
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 3.4e-15 85.9 182 39.6
SGA_v2.0_scaffold69G23091 Striga asiatica HOM05D001921 ORTHO05D001784 3.4e-15 85.9 110 50.9
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.4e-15 85.9 190 39.5
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 4.4e-15 85.5 211 38.4
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 4.4e-15 85.5 188 39.4
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 5.8e-15 85.1 181 40.3
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.8e-15 85.1 181 40.3
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.8e-15 85.1 181 40.3
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 7.6e-15 84.7 201 39.8
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 7.6e-15 84.7 216 38.9
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 7.6e-15 84.7 180 37.2
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 9.9e-15 84.3 217 38.7
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 1.3e-14 84.0 196 36.2
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 1.7e-14 83.6 201 37.8
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.2e-14 83.2 205 36.1
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 2.9e-14 82.8 186 39.8
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.9e-14 82.8 194 40.7
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 3.7e-14 82.4 182 40.7
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 6.4e-14 81.6 202 36.1
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 6.4e-14 81.6 196 39.8
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.4e-14 81.6 205 35.6
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 6.4e-14 81.6 190 38.4
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 8.4e-14 81.3 218 37.6
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.1e-13 80.9 191 37.7
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.4e-13 80.5 204 35.8
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.4e-13 80.5 195 42.6
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.4e-13 80.5 209 37.3
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 1.9e-13 80.1 190 37.4
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 1.9e-13 80.1 180 40.0
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 4.1e-13 79.0 193 36.3
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 5.4e-13 78.6 194 38.7
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 7.1e-13 78.2 180 37.8
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 1.2e-12 77.4 185 37.8
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.2e-12 77.4 193 35.8
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 1.2e-12 77.4 218 35.8
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 1.6e-12 77.0 195 35.9
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 2.1e-12 76.6 186 34.9
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.7e-12 76.3 194 39.2
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.5e-12 75.9 194 39.2
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 3.5e-12 75.9 219 37.0
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 6.0e-12 75.1 181 38.7
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 7.8e-12 74.7 199 38.7
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 7.8e-12 74.7 183 36.1
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 7.8e-12 74.7 179 37.4
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 7.8e-12 74.7 177 39.5
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.8e-12 74.7 198 34.3
MSTRG.24769 Avicennia marina HOM05D001921 ORTHO05D001784 1.0e-11 74.3 182 37.9
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.0e-11 74.3 185 36.2
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.0e-11 74.3 210 34.3
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 1.3e-11 73.9 208 34.6
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.3e-11 73.9 211 37.9
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 1.7e-11 73.6 190 37.9
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 1.7e-11 73.6 192 35.4
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 2.3e-11 73.2 266 30.5
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 2.3e-11 73.2 223 34.1
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 2.3e-11 73.2 207 35.7
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 3.0e-11 72.8 179 37.4
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 5.1e-11 72.0 195 38.5
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 8.6e-11 71.2 213 38.0
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 8.6e-11 71.2 195 37.4
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.1e-10 70.9 213 38.5
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 1.1e-10 70.9 215 34.0
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 1.5e-10 70.5 186 34.9
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 1.5e-10 70.5 197 37.1
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.9e-10 70.1 218 35.8
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 3.3e-10 69.3 184 37.0
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 2.8e-09 66.2 183 34.4
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 2.8e-09 66.2 192 33.9
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 4.7e-09 65.5 209 31.1
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 6.2e-09 65.1 179 36.9
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 8.1e-09 64.7 183 33.3
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.1e-08 64.3 188 34.6
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.4e-08 63.9 187 34.8
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.4e-08 63.9 174 35.6
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 1.8e-08 63.5 182 34.6
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.8e-08 63.5 185 34.6
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 1.8e-08 63.5 184 32.1
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 2.4e-08 63.2 187 35.8
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 3.1e-08 62.8 195 33.8
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 4.0e-08 62.4 186 34.4
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 4.0e-08 62.4 188 36.7
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 4.0e-08 62.4 188 36.7
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 4.0e-08 62.4 199 33.2
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 8.9e-08 61.2 184 34.2
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 8.9e-08 61.2 189 38.1
Glyma.17G104300 Glycine max HOM05D001921 ORTHO05D001784 8.9e-08 61.2 199 34.7
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 8.9e-08 61.2 180 33.9
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 8.9e-08 61.2 180 35.6
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.2e-07 60.8 182 32.4
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.5e-07 60.5 137 38.0
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 2.0e-07 60.1 184 33.2
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 2.0e-07 60.1 184 32.1
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 2.0e-07 60.1 184 32.1
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 3.4e-07 59.3 142 35.9
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 3.4e-07 59.3 184 32.1
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 3.4e-07 59.3 184 32.1
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 3.4e-07 59.3 186 34.9
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 3.4e-07 59.3 193 33.2
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 3.4e-07 59.3 182 33.0
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 3.4e-07 59.3 190 30.5
Lalb_Chr12g0198531 Lupinus albus HOM05D001921 ORTHO05D001784 4.4e-07 58.9 101 40.6
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 7.6e-07 58.2 185 32.4
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.6e-07 58.2 194 36.1
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 7.6e-07 58.2 112 39.3
SEGI_33680 Sequoiadendron giganteum HOM05D001921 ORTHO05D001784 7.6e-07 58.2 202 29.7
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 9.9e-07 57.8 185 33.5
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 9.9e-07 57.8 47 61.7
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 9.9e-07 57.8 196 31.1
Lalb_Chr07g0179601 Lupinus albus HOM05D001921 ORTHO05D001784 9.9e-07 57.8 174 32.2
THA.LOC104804502 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.3e-06 57.4 180 34.4
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.3e-06 57.4 203 33.0
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 1.7e-06 57.0 164 34.8
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.2e-06 56.6 194 35.1
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 2.9e-06 56.2 122 40.2
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 3.8e-06 55.8 183 31.1
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.9e-06 55.5 130 38.5
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.9e-06 55.5 132 39.4
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 4.9e-06 55.5 183 31.7
TWI63G1839 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 4.9e-06 55.5 189 34.4
Cfa013095 Carpinus fangiana HOM05D001921 ORTHO05D001784 6.4e-06 55.1 148 35.1
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 6.4e-06 55.1 89 42.7
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 8.4e-06 54.7 184 32.1
AUR62031574 Chenopodium quinoa HOM05D000017 ORTHO05D000013 8.4e-06 54.7 125 31.2


User provided reference genes

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