Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 8.1e-185 650.2 316 100.0
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 4.6e-111 405.2 354 61.9
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 4.3e-101 372.1 309 64.1
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 9.9e-98 360.9 245 69.8
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.2e-95 354.0 300 59.3
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 4.6e-95 352.1 298 59.4
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 6.6e-94 348.2 280 60.7
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 8.6e-94 347.8 355 53.2
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.5e-93 347.1 290 61.0
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 1.9e-93 346.7 354 53.7
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 9.6e-93 344.4 294 59.9
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 9.6e-93 344.4 264 63.6
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 9.6e-93 344.4 345 53.9
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.2e-92 344.0 295 56.9
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.1e-92 343.2 276 60.9
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 3.6e-92 342.4 332 53.9
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 8.1e-92 341.3 283 59.7
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.1e-91 340.9 283 58.0
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.8e-91 340.1 296 58.8
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 3.1e-91 339.3 290 59.7
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.1e-91 339.3 346 52.6
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.0e-91 339.0 283 60.1
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 6.8e-91 338.2 283 59.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.5e-90 337.0 347 51.6
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.5e-90 337.0 283 58.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 4.4e-90 335.5 284 61.3
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 5.8e-90 335.1 317 55.5
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 7.6e-90 334.7 286 57.7
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.3e-89 334.0 307 54.4
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.7e-89 333.6 286 56.6
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 8.4e-89 331.3 290 56.9
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.1e-88 330.9 283 57.6
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.1e-88 330.9 353 50.4
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.1e-88 330.9 290 57.9
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.1e-88 330.9 293 57.0
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.4e-88 330.5 288 58.3
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.4e-88 330.5 286 57.7
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.9e-88 330.1 299 58.5
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.9e-88 330.1 352 51.7
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 3.2e-88 329.3 342 52.9
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 4.2e-88 328.9 268 61.9
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 5.4e-88 328.6 303 54.5
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 7.1e-88 328.2 282 58.2
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 9.3e-88 327.8 289 58.1
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 9.3e-88 327.8 286 57.7
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.6e-87 327.0 279 57.7
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.6e-87 327.0 314 55.7
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.1e-87 326.6 278 59.0
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.1e-87 326.6 311 52.4
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.5e-87 325.9 325 54.5
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 6.0e-87 325.1 299 56.2
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 7.8e-87 324.7 352 50.9
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.0e-86 324.3 354 50.6
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.0e-86 324.3 284 57.7
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.3e-86 323.9 289 57.4
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 2.3e-86 323.2 344 50.6
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 3.9e-86 322.4 298 54.4
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 5.1e-86 322.0 303 53.1
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 8.7e-86 321.2 329 52.3
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.1e-85 320.9 290 55.5
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.1e-85 320.9 296 55.7
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.1e-85 320.9 295 56.3
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.5e-85 319.7 298 54.0
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 4.3e-85 318.9 304 53.3
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 5.6e-85 318.5 304 54.9
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.3e-84 317.4 348 48.3
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.3e-84 317.4 290 55.5
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-84 317.4 365 47.9
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.3e-84 317.4 296 53.7
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.6e-84 317.0 305 52.8
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.6e-84 317.0 354 49.7
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 3.6e-84 315.8 351 48.4
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 4.8e-84 315.5 285 55.4
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.8e-84 315.5 309 51.8
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 4.8e-84 315.5 248 60.1
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.2e-84 315.1 268 56.7
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.2e-84 315.1 349 48.1
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.1e-83 314.3 291 57.4
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.1e-83 314.3 347 49.0
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.8e-83 313.5 340 49.1
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.4e-83 313.2 291 54.0
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 3.1e-83 312.8 331 50.8
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 3.1e-83 312.8 311 51.4
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.0e-83 312.4 283 54.8
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 6.9e-83 311.6 282 55.0
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.2e-82 310.8 262 58.8
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.5e-82 310.5 351 49.3
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 2.0e-82 310.1 256 60.5
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 2.6e-82 309.7 295 53.2
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.4e-82 309.3 288 54.5
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 5.8e-82 308.5 312 51.3
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 7.6e-82 308.1 330 50.6
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.3e-81 307.4 265 55.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.2e-81 306.6 286 54.5
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.2e-81 306.6 256 58.2
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 3.8e-81 305.8 350 47.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 4.9e-81 305.4 261 58.6
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 6.4e-81 305.1 283 54.1
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 6.4e-81 305.1 316 51.6
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 8.4e-81 304.7 286 54.9
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.4e-80 303.9 302 51.7
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.9e-80 303.5 325 48.3
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 3.2e-80 302.8 273 53.8
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 3.2e-80 302.8 291 53.3
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 4.2e-80 302.4 286 54.2
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.6e-79 300.4 265 58.1
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.6e-79 300.4 283 53.7
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 2.7e-79 299.7 299 53.2
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 2.7e-79 299.7 261 56.7
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 4.6e-79 298.9 303 51.8
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.6e-79 298.9 282 52.5
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 7.8e-79 298.1 261 57.9
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 7.8e-79 298.1 272 54.4
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 7.8e-79 298.1 316 48.7
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.3e-78 297.4 265 57.7
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.3e-78 297.4 321 50.5
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.5e-77 293.1 285 51.9
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.3e-76 290.8 285 51.6
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.1e-76 290.0 275 55.6
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 9.0e-75 284.6 311 48.6
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 6.4e-73 278.5 328 46.0
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.4e-72 277.3 291 50.5
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.7e-70 268.1 298 49.3
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 9.6e-69 264.6 227 58.1
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.1e-68 263.5 227 56.4
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.1e-68 263.5 288 50.7
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.5e-66 257.3 251 51.8
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.8e-65 252.7 303 45.5
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 3.8e-65 252.7 251 53.0
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 7.1e-64 248.4 334 43.7
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 2.3e-62 243.4 281 45.9
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 5.1e-62 242.3 158 72.2
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.5e-61 240.0 283 42.8
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 7.4e-61 238.4 261 44.8
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 4.8e-60 235.7 176 65.3
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 4.1e-59 232.6 229 54.6
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 7.6e-58 228.4 204 56.4
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.3e-57 227.6 200 58.0
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.5e-53 213.4 261 43.3
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.5e-53 213.4 233 48.5
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 7.4e-53 211.8 171 57.9
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 9.7e-53 211.5 173 57.8
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 9.7e-53 211.5 171 58.5
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 6.3e-52 208.8 229 47.2
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.9e-51 205.3 182 58.2
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.0e-51 204.9 182 58.2
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.5e-50 204.1 188 56.4
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.5e-50 204.1 162 61.1
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.6e-50 203.4 288 38.5
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.4e-48 197.6 148 61.5
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.9e-48 197.2 182 52.7
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 4.1e-43 179.5 168 53.6
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.7e-41 174.1 181 51.9
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 1.0e-38 164.9 107 71.0
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.7e-38 162.2 128 59.4
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.5e-32 144.4 260 31.9
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.2e-32 142.9 122 53.3
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 5.5e-32 142.5 271 33.9
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.1e-31 139.0 96 65.6
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.1e-31 139.0 97 64.9
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 4.0e-30 136.3 82 76.8
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 8.8e-30 135.2 497 24.9
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.7e-28 131.0 82 73.2
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 2.2e-28 130.6 85 67.1
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 9.1e-27 125.2 352 24.7
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 1.6e-26 124.4 119 53.8
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.6e-26 124.4 82 72.0
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.0e-25 121.7 82 68.3
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.5e-24 115.9 150 44.7
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.2e-23 114.8 90 57.8
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.0e-21 107.5 114 50.0
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 8.5e-17 92.0 59 72.9
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.1e-15 87.4 63 61.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.4e-14 84.7 106 50.0
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.7e-13 79.3 50 72.0
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 2.4e-11 73.9 51 66.7
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 1.3e-09 68.2 56 58.9
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 6.6e-09 65.9 54 59.3
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 3.3e-08 63.5 52 63.5
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.0e-06 57.0 46 54.3


User provided reference genes

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