Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.8e-237 825.5 413 100.0
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.4e-181 639.8 414 81.4
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 3.8e-150 535.4 414 65.9
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 2.2e-145 519.6 424 65.1
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.3e-121 440.7 406 56.9
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.9e-117 426.8 368 58.4
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.5e-117 426.4 414 55.1
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 2.8e-116 422.9 410 55.6
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 6.2e-116 421.8 328 62.8
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 8.0e-116 421.4 411 53.8
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.8e-115 420.2 413 53.3
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 3.1e-115 419.5 412 52.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 1.2e-114 417.5 326 62.3
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 2.0e-114 416.8 321 62.0
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.0e-114 416.8 416 52.4
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.4e-114 416.0 414 52.7
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 7.5e-114 414.8 416 52.6
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.7e-113 413.7 372 57.8
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 2.9e-113 412.9 321 61.1
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 1.1e-112 411.0 375 56.3
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.3e-110 404.1 350 58.0
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.3e-110 404.1 328 61.3
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.7e-110 403.7 357 57.4
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 8.6e-110 401.4 352 57.7
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.1e-109 401.0 349 57.9
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.5e-109 399.8 337 58.5
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 3.3e-109 399.4 356 56.5
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 4.3e-109 399.1 356 57.3
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 7.3e-109 398.3 329 58.4
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 7.3e-109 398.3 328 59.1
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.6e-108 397.1 424 50.0
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 2.1e-108 396.7 410 50.7
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 2.1e-108 396.7 331 58.3
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 3.6e-108 396.0 335 58.2
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 6.2e-108 395.2 336 58.9
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 8.1e-108 394.8 326 58.9
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 8.1e-108 394.8 413 52.1
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.8e-107 393.7 419 49.9
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 3.1e-107 392.9 416 50.5
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 8.9e-107 391.3 414 49.3
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.0e-106 390.2 367 52.6
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.6e-106 389.8 334 57.5
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 3.4e-106 389.4 320 58.8
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 5.8e-106 388.7 370 54.9
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 7.5e-106 388.3 318 58.8
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 9.8e-106 387.9 306 60.8
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 9.8e-106 387.9 410 48.8
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.9e-105 386.3 378 53.7
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 3.7e-105 386.0 405 50.4
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 4.9e-105 385.6 369 54.7
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 4.9e-105 385.6 415 49.6
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 6.4e-105 385.2 370 54.3
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 4.1e-104 382.5 368 50.0
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 5.4e-104 382.1 331 54.7
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.2e-103 380.9 338 53.8
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 6.0e-103 378.6 369 52.3
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.1e-101 374.4 331 53.2
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.1e-101 374.4 298 57.4
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 1.5e-101 374.0 309 57.3
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.5e-101 374.0 334 54.8
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 2.5e-101 373.2 318 56.6
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 3.3e-101 372.9 338 52.7
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 7.3e-101 371.7 409 47.9
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 7.3e-101 371.7 394 49.5
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 7.3e-101 371.7 334 53.0
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 9.5e-101 371.3 397 48.9
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.1e-100 370.2 367 50.7
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 2.1e-100 370.2 305 58.7
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 2.8e-100 369.8 323 55.7
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 3.6e-100 369.4 397 49.1
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 4.7e-100 369.0 408 47.5
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 8.1e-100 368.2 413 47.5
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.1e-99 367.9 366 50.0
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.8e-99 367.1 419 46.1
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.8e-99 367.1 410 47.1
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 3.1e-99 366.3 408 47.1
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 4.0e-99 365.9 332 52.4
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 4.0e-99 365.9 332 52.4
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 6.8e-99 365.2 411 47.0
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.2e-98 364.4 372 47.6
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.2e-98 364.4 396 50.3
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.0e-98 363.6 416 45.7
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.3e-97 360.9 364 48.6
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.3e-97 360.9 397 48.4
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.2e-97 360.1 415 45.5
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.2e-97 360.1 298 55.0
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 2.9e-97 359.8 370 50.3
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 3.7e-97 359.4 368 49.5
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 3.2e-96 356.3 408 46.8
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 4.6e-95 352.4 423 46.8
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.5e-93 347.4 318 55.0
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 4.3e-93 345.9 285 62.5
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 5.6e-93 345.5 322 54.7
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 9.6e-93 344.7 313 52.7
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 9.6e-93 344.7 397 46.3
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 2.0e-90 337.0 320 50.9
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 3.4e-90 336.3 316 54.4
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.2e-89 333.6 310 52.6
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.9e-89 333.2 334 51.8
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.0e-86 324.7 264 62.5
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 3.9e-86 322.8 258 60.1
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 4.0e-83 312.8 345 49.9
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 6.9e-83 312.0 302 56.6
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 6.4e-81 305.4 318 47.8
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 2.4e-75 287.0 256 53.9
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.7e-73 280.8 232 56.0
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 9.3e-72 275.0 345 42.9
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 1.1e-67 261.5 275 50.5
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 5.3e-67 259.2 286 47.9
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.5e-66 256.1 228 53.1
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 9.3e-64 248.4 207 56.5
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 8.7e-62 241.9 369 39.6
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 8.7e-62 241.9 313 43.8
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 4.6e-55 219.5 256 48.0
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 7.9e-47 192.2 275 39.3
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 2.0e-45 187.6 188 51.6
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 2.7e-39 167.2 303 30.7
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 4.4e-37 159.8 123 57.7
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 5.3e-35 152.9 316 28.8
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.7e-34 149.1 132 56.1
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 8.5e-33 145.6 180 42.8
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 5.5e-32 142.9 121 58.7
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 5.2e-30 136.3 231 35.5
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 1.4e-27 128.3 168 41.1
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 3.8e-25 120.2 149 38.3
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 7.2e-24 115.9 98 60.2
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 4.7e-23 113.2 76 65.8
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 6.1e-23 112.8 295 26.8
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 2.3e-22 110.9 245 27.8
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.6e-18 98.2 147 40.8
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.3e-17 95.1 83 55.4
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 2.9e-17 94.0 111 46.8
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.1e-15 87.8 295 25.1
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.5e-13 81.6 90 47.8
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 2.0e-13 81.3 160 35.6
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.7e-12 77.0 93 41.9
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.7e-07 60.1 70 45.7


User provided reference genes

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