Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 6.8e-57 223.8 115 100.0
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 5.9e-24 114.4 115 53.9
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 6.1e-21 104.4 86 65.1
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 3.0e-20 102.1 110 55.5
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.9e-20 101.7 106 48.1
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 3.3e-19 98.6 99 57.6
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.4e-19 97.4 102 50.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 2.8e-18 95.5 108 50.0
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.7e-18 95.1 110 48.2
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 3.1e-17 92.0 93 51.6
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 5.3e-17 91.3 102 45.1
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.2e-16 90.1 102 48.0
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.5e-16 89.7 114 40.4
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 7.7e-16 87.4 108 43.5
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.0e-15 87.0 109 42.2
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.0e-15 87.0 106 45.3
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.0e-15 87.0 96 47.9
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.7e-15 86.3 89 49.4
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.7e-15 86.3 91 50.5
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.2e-15 85.9 109 44.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 6.5e-15 84.3 107 43.0
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.5e-15 84.3 93 47.3
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.5e-15 84.3 93 47.3
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.4e-14 83.2 107 43.9
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.4e-14 83.2 100 46.0
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.5e-14 82.4 107 41.1
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.5e-14 82.4 95 45.3
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 3.2e-14 82.0 106 38.7
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 3.2e-14 82.0 106 38.7
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.2e-14 81.6 105 41.9
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 4.2e-14 81.6 89 44.9
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 4.2e-14 81.6 102 41.2
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 4.2e-14 81.6 101 46.5
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 7.2e-14 80.9 93 48.4
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.6e-13 79.7 109 38.5
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.1e-13 79.3 114 40.4
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.1e-13 79.3 106 42.5
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.6e-13 78.6 86 51.2
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 3.6e-13 78.6 95 46.3
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 3.6e-13 78.6 109 38.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 4.6e-13 78.2 108 40.7
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 4.6e-13 78.2 106 42.5
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.6e-13 78.2 105 41.9
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.6e-13 78.2 93 44.1
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 6.1e-13 77.8 93 43.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 6.1e-13 77.8 93 44.1
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 7.9e-13 77.4 102 40.2
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.0e-12 77.0 118 40.7
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-12 76.6 113 40.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-12 76.6 64 56.2
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.8e-12 76.3 102 40.2
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.8e-12 76.3 94 45.7
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.0e-12 75.5 77 53.2
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.9e-12 75.1 95 42.1
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.9e-12 75.1 95 42.1
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.1e-12 74.7 106 40.6
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.1e-12 74.7 64 54.7
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 5.1e-12 74.7 67 53.7
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.1e-12 74.7 100 42.0
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.7e-12 74.3 93 44.1
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.7e-12 74.3 93 44.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 6.7e-12 74.3 93 40.9
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 8.8e-12 73.9 105 38.1
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 8.8e-12 73.9 107 39.3
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 8.8e-12 73.9 105 41.9
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 8.8e-12 73.9 71 52.1
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.1e-11 73.6 113 38.1
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-11 73.2 99 44.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.5e-11 73.2 80 46.2
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.5e-11 73.2 71 52.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.5e-11 73.2 112 37.5
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.0e-11 72.8 89 41.6
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 2.5e-11 72.4 110 40.0
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.3e-11 72.0 113 40.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 4.3e-11 71.6 103 41.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.7e-11 71.2 93 43.0
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 9.7e-11 70.5 97 42.3
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 9.7e-11 70.5 97 42.3
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 9.7e-11 70.5 98 41.8
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.7e-10 69.7 118 35.6
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.7e-10 69.7 97 42.3
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.7e-10 69.7 99 43.4
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.7e-10 69.7 105 40.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 2.2e-10 69.3 97 42.3
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 2.8e-10 68.9 96 40.6
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 2.8e-10 68.9 96 40.6
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.8e-10 68.9 104 38.5
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 2.8e-10 68.9 102 38.2
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 2.8e-10 68.9 107 39.3
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.8e-10 68.9 113 38.9
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 3.7e-10 68.6 118 35.6
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.7e-10 68.6 64 50.0
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.7e-10 68.6 111 36.0
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.7e-10 68.6 91 41.8
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 3.7e-10 68.6 106 35.8
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 4.8e-10 68.2 97 41.2
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 4.8e-10 68.2 111 36.9
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 4.8e-10 68.2 111 38.7
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 6.3e-10 67.8 107 37.4
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.3e-10 67.8 94 43.6
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 8.2e-10 67.4 110 38.2
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 8.2e-10 67.4 110 38.2
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 8.2e-10 67.4 96 40.6
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.1e-09 67.0 110 37.3
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.1e-09 67.0 110 37.3
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.1e-09 67.0 60 55.0
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.1e-09 67.0 69 44.9
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.4e-09 66.6 66 50.0
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.4e-09 66.6 66 50.0
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 2.4e-09 65.9 96 42.7
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 2.4e-09 65.9 62 54.8
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.1e-09 65.5 109 36.7
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 3.1e-09 65.5 87 40.2
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 4.1e-09 65.1 64 54.7
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 4.1e-09 65.1 64 54.7
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 5.3e-09 64.7 108 36.1
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 5.3e-09 64.7 66 53.0
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.3e-09 64.7 60 55.0
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 5.3e-09 64.7 63 47.6
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 6.9e-09 64.3 102 37.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 6.9e-09 64.3 94 41.5
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 9.1e-09 63.9 96 39.6
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 9.1e-09 63.9 78 41.0
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 9.1e-09 63.9 78 41.0
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 9.1e-09 63.9 101 39.6
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 9.1e-09 63.9 101 39.6
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 1.2e-08 63.5 105 38.1
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-08 63.5 60 55.0
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.2e-08 63.5 73 46.6
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 1.5e-08 63.2 77 40.3
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.5e-08 63.2 93 39.8
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.5e-08 63.2 93 39.8
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.5e-08 63.2 93 40.9
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 1.5e-08 63.2 109 33.9
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.0e-08 62.8 77 40.3
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.0e-08 62.8 77 40.3
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.0e-08 62.8 77 40.3
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.0e-08 62.8 111 35.1
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.6e-08 62.4 94 41.5
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 3.4e-08 62.0 114 36.8
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.4e-08 62.0 74 44.6
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 5.9e-08 61.2 104 38.5
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 5.9e-08 61.2 68 42.6
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 7.7e-08 60.8 62 51.6
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.0e-07 60.5 97 40.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.3e-07 60.1 69 43.5
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.7e-07 59.7 91 39.6
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.7e-07 59.7 102 40.2
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-07 59.3 103 37.9
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.9e-07 58.9 80 46.2
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 5.0e-07 58.2 70 48.6
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 5.0e-07 58.2 60 45.0
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 6.5e-07 57.8 103 37.9
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.1e-06 57.0 77 44.2
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.1e-06 57.0 77 44.2
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.1e-06 57.0 77 44.2
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.4e-06 56.6 85 43.5
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 1.4e-06 56.6 77 46.8
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 1.9e-06 56.2 77 44.2
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.9e-06 56.2 60 51.7
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.5e-06 55.8 95 40.0
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.5e-06 55.8 101 38.6
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 4.2e-06 55.1 63 50.8
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 5.5e-06 54.7 65 47.7
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 5.5e-06 54.7 77 48.1


User provided reference genes

Program Settings