Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.2e-189 666.4 347 100.0
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 8.5e-119 431.0 317 65.3
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 1.1e-118 430.6 347 63.4
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 3.6e-117 425.6 351 64.4
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.7e-114 416.8 330 62.4
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 2.3e-108 396.4 341 58.9
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.8e-106 389.4 337 60.2
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 3.1e-105 386.0 337 59.3
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.6e-104 383.6 341 60.4
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.0e-104 383.3 338 58.9
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 8.6e-103 377.9 313 59.4
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.1e-102 377.5 341 57.8
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 6.3e-98 361.7 334 56.0
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 1.8e-97 360.1 337 55.5
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.8e-97 360.1 330 54.8
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 7.0e-97 358.2 338 54.7
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 9.2e-97 357.8 331 57.1
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.6e-96 357.1 336 53.9
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 2.0e-96 356.7 339 55.8
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 2.7e-96 356.3 337 55.5
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 5.9e-96 355.1 337 53.4
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 5.9e-96 355.1 333 55.6
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 5.9e-96 355.1 341 55.4
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.0e-95 354.4 335 55.5
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.0e-95 354.4 342 54.1
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.3e-95 353.2 315 56.5
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 2.9e-95 352.8 327 55.4
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.9e-95 352.4 341 53.1
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.9e-95 352.4 342 53.8
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 3.9e-95 352.4 342 53.2
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 1.5e-94 350.5 333 53.2
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.9e-94 350.1 352 52.8
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 2.5e-94 349.7 348 51.4
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.5e-94 349.7 333 53.8
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 2.5e-94 349.7 314 58.3
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.5e-94 349.7 336 54.8
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 3.3e-94 349.4 312 59.9
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 4.3e-94 349.0 313 56.5
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 4.3e-94 349.0 333 54.4
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 5.6e-94 348.6 336 53.0
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 7.3e-94 348.2 338 55.0
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 7.3e-94 348.2 311 56.6
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 7.3e-94 348.2 336 53.0
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 7.3e-94 348.2 334 54.5
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 9.5e-94 347.8 336 51.8
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-93 347.4 334 53.3
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.2e-93 347.4 336 53.3
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 1.6e-93 347.1 336 53.9
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 2.8e-93 346.3 335 53.7
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 2.8e-93 346.3 337 53.4
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.8e-93 346.3 348 54.6
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 3.6e-93 345.9 346 53.5
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 4.7e-93 345.5 331 55.3
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 6.1e-93 345.1 314 57.3
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 6.1e-93 345.1 314 57.3
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 1.0e-92 344.4 349 51.0
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.8e-92 343.6 336 52.1
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.8e-92 343.6 342 53.5
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 2.3e-92 343.2 317 55.8
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 4.0e-92 342.4 269 62.5
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 5.2e-92 342.0 337 52.2
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 5.2e-92 342.0 339 52.5
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 6.8e-92 341.7 311 54.3
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 6.8e-92 341.7 311 54.3
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 6.8e-92 341.7 311 54.3
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-91 340.9 339 52.2
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-91 340.9 339 52.2
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 2.6e-91 339.7 340 51.8
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.6e-91 339.7 341 51.3
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 3.4e-91 339.3 347 51.9
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.4e-91 339.0 347 51.3
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 4.4e-91 339.0 330 53.9
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.3e-90 337.4 336 54.5
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 2.9e-90 336.3 337 52.2
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 4.9e-90 335.5 343 51.6
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 4.9e-90 335.5 343 51.6
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 4.9e-90 335.5 341 53.4
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 4.9e-90 335.5 321 54.5
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 6.4e-90 335.1 327 52.9
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 6.4e-90 335.1 334 52.1
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.1e-89 334.3 342 52.6
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.1e-89 334.3 336 52.4
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.4e-89 334.0 343 52.2
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.4e-89 334.0 335 53.4
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.1e-89 332.4 337 51.6
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 7.0e-89 331.6 339 51.3
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 9.2e-89 331.3 340 52.4
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.2e-88 330.9 325 54.2
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.2e-88 330.9 343 53.1
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.6e-88 330.5 334 51.8
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.6e-88 330.5 336 53.3
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.0e-88 330.1 304 56.2
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 2.7e-88 329.7 336 51.8
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 3.5e-88 329.3 311 54.3
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 4.6e-88 328.9 334 53.3
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 6.0e-88 328.6 342 51.5
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 2.3e-87 326.6 338 50.6
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.1e-86 324.3 331 53.8
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 2.5e-86 323.2 352 50.3
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 3.3e-86 322.8 337 52.2
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 1.2e-85 320.9 334 50.3
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.4e-84 317.4 344 49.4
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 1.4e-84 317.4 342 50.3
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 2.3e-84 316.6 336 49.4
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.5e-83 313.9 312 51.6
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.9e-82 309.7 346 48.6
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 3.7e-82 309.3 338 49.7
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-81 307.8 345 48.1
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-81 307.4 341 48.7
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.4e-81 307.4 341 48.7
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 3.2e-81 306.2 312 51.3
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 5.4e-81 305.4 318 50.0
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 2.3e-79 300.1 337 49.3
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 3.0e-79 299.7 336 49.7
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.3e-78 295.8 336 48.5
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 9.5e-78 294.7 313 49.2
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.6e-77 292.7 338 49.7
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 2.3e-76 290.0 280 54.3
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 2.3e-76 290.0 284 52.5
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.5e-75 287.3 294 51.4
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 7.6e-75 285.0 336 47.3
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.7e-74 283.9 337 47.5
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.4e-74 282.0 333 45.3
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 8.3e-74 281.6 336 46.1
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 8.3e-74 281.6 347 47.3
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.9e-73 280.4 334 44.9
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 3.2e-73 279.6 335 48.7
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 7.8e-72 275.0 347 46.4
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.0e-71 274.6 315 45.1
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 3.9e-71 272.7 346 44.8
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 5.1e-71 272.3 314 46.8
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.9e-70 270.4 334 45.2
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 3.6e-69 266.2 348 42.2
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 4.0e-68 262.7 347 41.8
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.0e-67 260.4 189 66.1
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 5.8e-67 258.8 347 41.2
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.4e-66 255.4 330 42.7
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 8.4e-66 255.0 330 43.6
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.1e-65 254.6 349 40.7
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.1e-65 254.6 349 40.7
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 4.2e-65 252.7 334 44.6
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.5e-64 249.6 177 63.3
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 4.6e-64 249.2 189 63.0
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.6e-62 242.3 191 60.2
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.8e-61 240.0 227 52.0
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 8.1e-61 238.4 189 59.8
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-60 237.7 277 47.3
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.5e-59 234.2 396 38.9
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 1.3e-58 231.1 283 47.0
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.2e-58 230.3 189 57.7
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 2.4e-57 226.9 312 41.3
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 4.2e-57 226.1 235 49.4
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.5e-54 217.6 263 45.6
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 2.5e-54 216.9 192 53.1
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 2.1e-53 213.8 256 46.1
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.0e-52 209.5 183 56.8
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 9.0e-52 208.4 184 53.3
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 2.0e-43 180.6 331 33.8
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 3.8e-42 176.4 227 46.3
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 3.9e-39 166.4 335 33.7
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 3.1e-36 156.8 164 51.8
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 3.2e-33 146.7 227 41.0
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.5e-27 127.9 106 61.3
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 3.4e-27 126.7 92 62.0
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.7e-26 124.4 172 38.4
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 7.2e-25 119.0 95 58.9
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 8.8e-23 112.1 150 44.7
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 3.7e-21 106.7 89 51.7
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-20 105.1 75 65.3
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 5.3e-20 102.8 155 41.9
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 6.5e-18 95.9 340 28.5
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 2.1e-16 90.9 77 61.0
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 1.8e-12 77.8 59 61.0
SMO351G0034 Selaginella moellendorffii HOM05D003755 ORTHO05D376906 4.5e-11 73.2 320 27.8
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 5.0e-10 69.7 48 68.8
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 5.0e-10 69.7 81 40.7
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 7.2e-09 65.9 73 49.3
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 7.2e-09 65.9 98 42.9
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.2e-08 65.1 76 34.2
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 8.0e-08 62.4 71 40.8


User provided reference genes

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