Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.2e-264 916.0 487 100.0
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 2.5e-209 732.3 448 87.3
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 8.9e-199 697.2 439 83.8
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 3.4e-198 695.3 441 83.4
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 3.6e-192 675.2 441 81.4
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 6.9e-191 671.0 440 80.2
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 2.0e-190 669.5 440 79.5
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 4.5e-190 668.3 490 73.9
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 4.5e-190 668.3 440 80.2
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 7.6e-190 667.5 448 78.3
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 9.9e-190 667.2 442 79.6
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 1.7e-189 666.4 437 80.5
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 2.2e-189 666.0 439 80.4
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 2.9e-189 665.6 440 80.2
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 3.8e-189 665.2 448 78.8
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 3.8e-189 665.2 439 79.3
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.1e-188 663.7 448 78.6
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.9e-188 662.9 455 77.6
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 5.4e-188 661.4 439 80.4
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 7.1e-188 661.0 436 79.1
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 9.3e-188 660.6 489 72.8
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 1.6e-187 659.8 442 79.9
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 2.7e-187 659.1 448 78.3
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 6.0e-187 657.9 430 80.0
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.3e-186 656.8 439 78.1
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.3e-186 656.8 439 78.1
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 3.0e-186 655.6 434 78.6
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.1e-185 653.7 429 80.0
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 4.3e-185 651.7 442 78.5
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 4.3e-185 651.7 428 79.7
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 4.3e-185 651.7 439 78.4
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 7.4e-185 651.0 445 77.5
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.6e-184 649.8 439 79.5
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.1e-184 649.4 455 78.0
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 4.8e-184 648.3 455 77.8
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.8e-184 648.3 455 77.8
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 6.2e-184 647.9 426 79.8
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 8.1e-184 647.5 445 79.6
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.1e-183 647.1 445 79.8
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 4.0e-183 645.2 437 76.7
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 5.3e-183 644.8 439 77.7
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 5.3e-183 644.8 444 76.8
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 6.9e-183 644.4 428 79.2
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 6.9e-183 644.4 436 77.8
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 9.0e-183 644.0 447 77.0
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.2e-182 643.7 428 79.4
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 1.2e-182 643.7 445 77.1
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.5e-182 643.3 428 79.2
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.5e-182 643.3 449 77.1
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 2.0e-182 642.9 428 78.7
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 2.6e-182 642.5 439 77.7
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 5.8e-182 641.3 429 78.6
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 5.8e-182 641.3 429 78.6
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 5.8e-182 641.3 440 77.7
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 9.9e-182 640.6 428 78.7
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 9.9e-182 640.6 433 78.5
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 9.9e-182 640.6 434 77.0
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.3e-181 640.2 440 77.3
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.3e-181 640.2 487 71.7
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 2.2e-181 639.4 449 77.7
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.2e-181 639.4 461 73.5
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 2.9e-181 639.0 431 78.7
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.1e-180 637.1 433 77.8
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.4e-180 636.7 485 71.5
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 1.4e-180 636.7 440 76.4
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 1.9e-180 636.3 413 79.9
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 4.2e-180 635.2 428 78.3
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 7.1e-180 634.4 428 78.5
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 7.1e-180 634.4 494 71.3
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.1e-179 632.9 490 70.6
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 2.1e-179 632.9 446 74.7
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 2.1e-179 632.9 437 76.9
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.8e-178 629.8 459 73.6
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 1.5e-177 626.7 447 74.0
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 3.3e-177 625.5 427 77.5
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 7.4e-177 624.4 443 74.5
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 1.6e-176 623.2 442 74.9
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 2.1e-176 622.9 436 73.9
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.1e-176 622.9 457 71.3
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 2.8e-176 622.5 406 78.8
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 6.2e-176 621.3 429 77.4
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 6.2e-176 621.3 442 74.9
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.4e-175 620.2 418 78.9
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 3.1e-175 619.0 439 75.2
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 5.3e-175 618.2 414 78.3
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 5.3e-175 618.2 414 78.3
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 6.9e-175 617.8 462 71.9
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 6.9e-175 617.8 447 72.3
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 1.2e-174 617.1 426 77.2
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 3.4e-174 615.5 428 77.1
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 3.4e-174 615.5 476 69.5
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 4.5e-174 615.1 440 74.5
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.3e-173 613.6 447 73.4
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.9e-173 612.5 405 77.5
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 8.4e-173 610.9 516 66.7
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.4e-172 610.1 450 73.8
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 7.1e-172 607.8 429 73.2
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 7.9e-171 604.4 439 73.3
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 2.3e-170 602.8 449 71.9
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 5.7e-169 598.2 422 73.2
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.3e-168 597.0 411 76.6
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 1.3e-168 597.0 417 72.9
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.4e-167 593.6 421 73.4
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.4e-167 593.6 448 69.9
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 2.4e-167 592.8 416 75.7
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 3.4e-166 589.0 442 71.3
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 2.9e-165 585.9 446 69.1
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.9e-164 583.2 420 72.9
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 3.2e-164 582.4 421 73.2
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 4.3e-161 572.0 421 72.4
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.7e-157 560.1 418 73.0
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.6e-155 553.5 439 68.1
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 4.4e-153 545.4 488 65.2
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 6.3e-152 541.6 448 65.4
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 6.3e-152 541.6 448 65.4
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.3e-137 492.7 416 60.3
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 9.7e-137 491.1 417 60.9
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 2.9e-133 479.6 441 58.0
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.7e-128 462.6 376 69.9
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.1e-116 424.5 365 61.4
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 1.2e-113 414.5 311 69.1
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.6e-110 404.1 296 70.6
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 5.6e-100 369.0 230 85.2
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.9e-96 356.7 418 48.1
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.6e-94 350.9 426 49.3
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 5.8e-81 305.8 258 65.9
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 4.8e-75 286.2 415 41.2
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.9e-72 276.2 293 57.3
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.2e-70 271.6 241 66.8
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.6e-67 261.2 384 37.8
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 3.4e-65 253.4 156 85.9
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.0e-61 240.4 422 33.9
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 5.6e-60 236.1 219 56.2
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 3.5e-54 216.9 162 70.4
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 4.6e-54 216.5 407 34.4
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.5e-52 211.5 453 35.8
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 1.0e-45 188.7 296 43.6
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.4e-39 168.3 126 63.5
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 3.8e-32 143.7 126 65.1
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.1e-26 125.6 119 62.2
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 2.6e-25 120.9 100 62.0
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 2.9e-24 117.5 86 69.8
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 2.9e-24 117.5 97 70.1
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 2.6e-20 104.4 383 25.3
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 1.1e-18 99.0 100 56.0
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 6.1e-14 83.2 423 24.6
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 8.8e-13 79.3 68 67.6
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 3.7e-11 73.9 367 26.2


User provided reference genes

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