Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.2e-203 713.0 386 100.0
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 3.2e-151 538.9 388 74.2
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 8.2e-147 524.2 387 73.1
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 3.6e-142 508.8 394 70.6
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 7.0e-138 494.6 389 69.2
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 2.7e-137 492.7 388 69.6
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 3.7e-131 472.2 395 65.6
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 5.2e-125 451.8 432 60.6
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.2e-124 450.7 384 61.2
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 4.4e-124 448.7 384 62.0
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 4.4e-124 448.7 384 62.0
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.4e-122 443.0 389 60.4
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.1e-122 442.2 384 61.2
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.2e-121 440.7 385 61.0
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.6e-121 440.3 259 81.9
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.0e-120 437.6 381 62.7
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.0e-120 437.6 385 64.7
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 1.3e-120 437.2 384 59.9
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.3e-120 437.2 384 59.9
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.7e-120 436.8 384 61.2
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.3e-120 436.4 254 82.3
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.9e-120 436.0 261 80.8
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 5.0e-120 435.3 268 79.1
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 6.6e-120 434.9 254 81.9
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 6.6e-120 434.9 386 60.6
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.1e-119 434.1 384 60.4
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.5e-119 433.7 384 59.9
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 4.3e-119 432.2 384 60.2
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 4.3e-119 432.2 384 59.4
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 9.5e-119 431.0 254 80.7
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.2e-118 430.6 257 79.8
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 3.6e-118 429.1 391 59.3
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 3.6e-118 429.1 384 60.9
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 3.6e-118 429.1 271 77.1
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.7e-118 428.7 384 58.6
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.8e-117 426.8 384 60.7
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.3e-117 426.4 384 61.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 8.9e-117 424.5 384 59.4
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.5e-116 423.7 422 55.5
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 3.4e-116 422.5 384 59.9
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 4.4e-116 422.2 422 55.2
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.7e-115 420.2 384 60.2
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.7e-115 420.2 384 60.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.9e-115 419.5 421 55.3
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.4e-114 417.2 390 57.4
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.8e-114 416.8 385 58.2
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.4e-114 416.4 385 58.2
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.0e-112 411.0 384 57.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 5.0e-112 408.7 385 59.0
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.5e-111 407.1 386 57.0
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.5e-111 406.4 262 75.6
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 2.5e-111 406.4 254 75.6
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.2e-110 404.1 384 56.2
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 6.2e-110 401.7 255 74.5
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.1e-109 401.0 384 58.1
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.1e-109 401.0 385 56.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 4.0e-109 399.1 384 55.5
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.8e-109 398.3 257 73.5
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 3.4e-108 396.0 384 57.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.4e-108 395.6 385 56.6
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 9.8e-108 394.4 256 76.2
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.2e-107 393.3 265 70.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 2.2e-107 393.3 254 75.6
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 6.4e-107 391.7 382 58.6
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 8.3e-107 391.3 255 73.3
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.9e-106 390.2 384 54.9
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 6.0e-105 385.2 388 55.4
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 1.3e-104 384.0 487 47.0
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.3e-104 384.0 382 55.2
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 3.0e-104 382.9 387 55.6
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.0e-104 382.9 387 56.3
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 5.0e-104 382.1 428 51.4
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.0e-104 382.1 360 58.3
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.5e-103 380.6 298 64.4
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 4.3e-103 379.0 256 68.0
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.2e-102 377.5 266 68.0
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.2e-102 377.5 384 58.6
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 8.1e-102 374.8 383 58.5
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.1e-101 374.4 266 69.5
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.3e-101 373.2 386 53.1
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 4.0e-101 372.5 385 54.8
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 6.8e-101 371.7 271 66.1
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 7.5e-100 368.2 390 52.8
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 8.3e-99 364.8 409 55.0
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.6e-96 354.8 390 52.1
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 3.6e-94 349.4 366 56.6
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 8.1e-94 348.2 214 75.7
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.1e-93 347.8 271 62.7
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-93 347.4 207 77.3
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 6.8e-93 345.1 386 50.8
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.2e-92 344.4 271 61.6
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.2e-92 344.4 387 52.2
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 3.4e-92 342.8 278 61.2
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 7.6e-92 341.7 248 68.1
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.7e-91 340.5 400 50.8
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 8.4e-91 338.2 254 65.0
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 5.4e-90 335.5 341 54.5
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 7.1e-90 335.1 279 59.5
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.6e-86 323.9 360 51.7
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.8e-85 320.5 257 57.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 2.4e-85 320.1 270 57.4
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.9e-83 312.4 418 45.7
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 5.4e-82 308.9 271 56.8
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 4.6e-81 305.8 271 56.5
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 7.8e-81 305.1 268 53.4
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.1e-79 301.2 174 79.9
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 5.6e-79 298.9 273 54.9
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 7.3e-79 298.5 261 55.9
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 7.3e-79 298.5 261 55.9
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 4.8e-78 295.8 261 55.6
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.4e-77 294.3 274 54.7
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 4.0e-77 292.7 266 53.4
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 5.3e-77 292.4 273 53.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 2.6e-76 290.0 273 53.5
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.3e-75 287.7 181 77.3
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 8.4e-75 285.0 393 48.3
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.1e-69 266.5 185 64.3
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 2.9e-67 260.0 263 48.7
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.8e-64 250.8 159 71.7
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.3e-64 250.4 167 71.9
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.5e-63 246.9 225 52.0
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.9e-58 230.7 153 71.2
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 9.3e-58 228.4 150 73.3
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 1.2e-57 228.0 308 40.6
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.3e-45 186.0 139 71.2
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.2e-42 176.8 123 68.3
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.7e-40 169.1 119 68.9
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 2.6e-39 167.2 246 40.7
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.3e-32 144.1 100 71.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.3e-30 138.3 101 67.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.4e-29 134.0 80 73.8
MSTRG.25744 Avicennia marina HOM05D005374 ORTHO05D006534 1.3e-19 101.7 149 49.7
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 6.5e-19 99.4 56 69.6
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 3.6e-17 93.6 179 39.1
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 8.0e-17 92.4 181 39.2
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 6.8e-16 89.4 51 84.3
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.8e-14 84.0 44 86.4
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-13 82.0 48 75.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 4.1e-13 80.1 55 72.7
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.2e-12 78.6 220 39.1
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 1.0e-08 65.5 376 20.7
PRCOL_00002207 Prasinoderma coloniale HOM05D005374 ORTHO05D006534 3.0e-08 63.9 257 26.5
Manes.04G055500 Manihot esculenta HOM05D006479 ORTHO05D008310 1.3e-06 58.5 75 34.7
AUR62020174 Chenopodium quinoa HOM05D006479 ORTHO05D008310 3.7e-06 57.0 74 37.8


User provided reference genes

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