Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold88G27248 Striga asiatica HOM05D002495 ORTHO05D002704 2.0e-58 228.8 110 100.0
SGA_v2.0_scaffold135G34836 Striga asiatica HOM05D002495 ORTHO05D002704 3.6e-15 85.1 88 54.5
Rhsim08G0061400 Rhododendron simsii HOM05D002495 ORTHO05D002704 1.7e-12 76.3 88 45.5
Migut.H00156 Erythranthe guttata HOM05D002495 ORTHO05D002704 3.8e-12 75.1 88 47.7
Actinidia33974 Actinidia chinensis HOM05D002495 ORTHO05D002704 4.9e-12 74.7 94 43.6
MSTRG.3194 Avicennia marina HOM05D002495 ORTHO05D002704 6.4e-12 74.3 88 45.5
CSS0007179 Camellia sinensis var. sinensis HOM05D002495 ORTHO05D002704 6.4e-12 74.3 88 45.5
COL.COLO4_06151 Corchorus olitorius HOM05D002495 ORTHO05D002704 6.4e-12 74.3 87 43.7
MELO3C009923.2 Cucumis melo HOM05D002495 ORTHO05D002704 6.4e-12 74.3 91 44.0
CsaV3_3G042030 Cucumis sativus L. HOM05D002495 ORTHO05D002704 6.4e-12 74.3 91 44.0
RcHm_v2.0_Chr2g0170351 Rosa chinensis HOM05D002495 ORTHO05D002704 6.4e-12 74.3 89 42.7
Eucgr.I01876 Eucalyptus grandis HOM05D002495 ORTHO05D002704 8.4e-12 73.9 86 45.3
FvH4_6g50080 Fragaria vesca HOM05D002495 ORTHO05D002704 8.4e-12 73.9 89 42.7
FAN02G0801 Fragaria x ananassa HOM05D002495 ORTHO05D002704 8.4e-12 73.9 89 42.7
FAN09G1530 Fragaria x ananassa HOM05D002495 ORTHO05D002704 8.4e-12 73.9 89 42.7
FAN14G1894 Fragaria x ananassa HOM05D002495 ORTHO05D002704 8.4e-12 73.9 89 42.7
MD17G1040300 Malus domestica HOM05D002495 ORTHO05D002704 8.4e-12 73.9 89 43.8
ClCG10G014550 Citrullus lanatus HOM05D002495 ORTHO05D002704 1.1e-11 73.6 92 43.5
Rhsim08G0057200 Rhododendron simsii HOM05D002495 ORTHO05D002704 1.1e-11 73.6 88 43.2
PGSC0003DMG400000512 Solanum tuberosum HOM05D002495 ORTHO05D002704 1.4e-11 73.2 88 45.5
AL5G17700 Arabidopsis lyrata HOM05D002495 ORTHO05D002704 1.9e-11 72.8 88 44.3
FAN05G0559 Fragaria x ananassa HOM05D002495 ORTHO05D002704 1.9e-11 72.8 89 42.7
BcaC06g33747 Brassica carinata HOM05D002495 ORTHO05D002704 3.2e-11 72.0 88 43.2
A06p40630 Brassica napus HOM05D002495 ORTHO05D002704 3.2e-11 72.0 88 43.2
C07p37370 Brassica napus HOM05D002495 ORTHO05D002704 3.2e-11 72.0 88 43.2
BolC7t44246H Brassica oleracea HOM05D002495 ORTHO05D002704 3.2e-11 72.0 88 43.2
BraA06t26982Z Brassica rapa HOM05D002495 ORTHO05D002704 3.2e-11 72.0 88 43.2
Glyma.19G013700 Glycine max HOM05D002495 ORTHO05D002704 3.2e-11 72.0 88 43.2
Oeu060605.1 Olea europaea HOM05D002495 ORTHO05D002704 3.2e-11 72.0 88 44.3
Sp2g17110 Schrenkiella parvula HOM05D002495 ORTHO05D002704 3.2e-11 72.0 88 42.0
Cc07_g02610 Coffea canephora HOM05D002495 ORTHO05D002704 4.2e-11 71.6 88 43.2
Manes.15G180600 Manihot esculenta HOM05D002495 ORTHO05D002704 4.2e-11 71.6 91 40.7
Nitab4.5_0007185g0030 Nicotiana tabacum HOM05D002495 ORTHO05D002704 4.2e-11 71.6 91 41.8
MD09G1039300 Malus domestica HOM05D002495 ORTHO05D002704 5.4e-11 71.2 89 43.8
Prupe.3G278700 Prunus persica HOM05D002495 ORTHO05D002704 5.4e-11 71.2 89 42.7
THA.LOC104805418 Tarenaya hassleriana HOM05D002495 ORTHO05D002704 5.4e-11 71.2 88 43.2
BcaC06g30926 Brassica carinata HOM05D002495 ORTHO05D002704 7.1e-11 70.9 88 42.0
CARHR149860 Cardamine hirsuta HOM05D002495 ORTHO05D002704 7.1e-11 70.9 88 40.9
Lju41A30T63 Lonicera japonica HOM05D002495 ORTHO05D002704 7.1e-11 70.9 88 43.2
Sabra11G0124100 Salix brachista HOM05D002495 ORTHO05D002704 7.1e-11 70.9 88 42.0
Sed0000928 Sechium edule HOM05D002495 ORTHO05D002704 7.1e-11 70.9 88 42.0
vmacro18228 Vaccinium macrocarpon HOM05D002495 ORTHO05D002704 7.1e-11 70.9 88 44.3
Hma1.2p1_0697F.1_g205040 Hydrangea macrophylla HOM05D002495 ORTHO05D002704 9.3e-11 70.5 91 42.9
Nitab4.5_0001952g0160 Nicotiana tabacum HOM05D002495 ORTHO05D002704 9.3e-11 70.5 88 42.0
Ah.16g106990 Amaranthus hybridus HOM05D002495 ORTHO05D002704 1.2e-10 70.1 86 43.0
Hma1.2p1_1975F.1_g309730 Hydrangea macrophylla HOM05D002495 ORTHO05D002704 1.2e-10 70.1 91 42.9
Peaxi162Scf00129g00085 Petunia axillaris HOM05D002495 ORTHO05D002704 1.2e-10 70.1 88 42.0
QL02p078161 Quercus lobata HOM05D002495 ORTHO05D002704 1.2e-10 70.1 89 41.6
AT3G28210 Arabidopsis thaliana HOM05D002495 ORTHO05D002704 2.1e-10 69.3 88 40.9
arahy.Tifrunner.gnm1.ann1.TLYY08 Arachis hypogaea HOM05D002495 ORTHO05D002704 2.1e-10 69.3 90 42.2
Carub.0005s0671 Capsella rubella HOM05D002495 ORTHO05D002704 2.1e-10 69.3 88 40.9
Potri.011G138500 Populus trichocarpa HOM05D002495 ORTHO05D002704 2.1e-10 69.3 90 40.0
VMungo0464G1545 Vigna mungo HOM05D002495 ORTHO05D002704 2.1e-10 69.3 88 44.3
Phvul.004G020300 Phaseolus vulgaris HOM05D002495 ORTHO05D002704 2.7e-10 68.9 91 41.8
Solyc02g087210.3 Solanum lycopersicum HOM05D002495 ORTHO05D002704 3.5e-10 68.6 89 41.6
Glyma.13G069200 Glycine max HOM05D002495 ORTHO05D002704 4.6e-10 68.2 91 42.9
arahy.Tifrunner.gnm1.ann1.XE45GC Arachis hypogaea HOM05D002495 ORTHO05D002704 6.0e-10 67.8 90 41.1
CAN.G206.58 Capsicum annuum HOM05D002495 ORTHO05D002704 6.0e-10 67.8 88 40.9
Cpa.g.sc14.84 Carica papaya HOM05D002495 ORTHO05D002704 6.0e-10 67.8 90 41.1
Lj2g0008756 Lotus japonicus HOM05D002495 ORTHO05D002704 6.0e-10 67.8 89 41.6
QL93p0205_0152 Quercus lobata HOM05D002495 ORTHO05D002704 7.8e-10 67.4 88 39.8
Aa31LG2G4700 Aethionema arabicum HOM05D002495 ORTHO05D002704 1.0e-09 67.0 88 43.2
Thhalv10004977m.g Eutrema salsugineum HOM05D002495 ORTHO05D002704 1.0e-09 67.0 88 39.8
Psat1g079520 Pisum sativum HOM05D002495 ORTHO05D002704 1.0e-09 67.0 89 40.4
TWI12G0639 Tripterygium wilfordii HOM05D002495 ORTHO05D002704 1.0e-09 67.0 88 42.0
GSVIVG01032538001 Vitis vinifera HOM05D002495 ORTHO05D002704 1.0e-09 67.0 88 40.9
CiPaw.03G034400 Carya illinoinensis HOM05D002495 ORTHO05D002704 1.3e-09 66.6 91 39.6
Gohir.A07G217700 Gossypium hirsutum HOM05D002495 ORTHO05D002704 1.3e-09 66.6 87 39.1
Ca_04226_v3 Cicer arietinum L. HOM05D002495 ORTHO05D002704 1.7e-09 66.2 89 41.6
Gohir.D07G224800 Gossypium hirsutum HOM05D002495 ORTHO05D002704 1.7e-09 66.2 87 37.9
DCAR_013982 Daucus carota HOM05D002495 ORTHO05D002704 2.3e-09 65.9 87 39.1
Duzib264G0073 Durio zibethinus HOM05D002495 ORTHO05D002704 2.3e-09 65.9 87 40.2
ECA232G0623 Erigeron canadensis HOM05D002495 ORTHO05D002704 2.3e-09 65.9 91 39.6
Ciclev10012852m.g Citrus clementina HOM05D002495 ORTHO05D002704 3.0e-09 65.5 88 40.9
Gorai.001G259200 Gossypium raimondii HOM05D002495 ORTHO05D002704 3.0e-09 65.5 87 37.9
Nn4g22911 Nelumbo nucifera HOM05D002495 ORTHO05D002704 3.0e-09 65.5 88 40.9
PGR142G1940 Punica granatum HOM05D002495 ORTHO05D002704 3.0e-09 65.5 89 40.4
AUR62032081 Chenopodium quinoa HOM05D002495 ORTHO05D002704 3.9e-09 65.1 88 42.0
Thecc.04G003400 Theobroma cacao HOM05D002495 ORTHO05D002704 3.9e-09 65.1 87 40.2
Lalb_Chr21g0319271 Lupinus albus HOM05D002495 ORTHO05D002704 5.1e-09 64.7 90 38.9
TPR.G31463 Trifolium pratense HOM05D002495 ORTHO05D002704 5.1e-09 64.7 89 38.2
Atru.chr8.2416 Acer truncatum HOM05D002495 ORTHO05D002704 6.6e-09 64.3 98 37.8
Cfa007470 Carpinus fangiana HOM05D002495 ORTHO05D002704 8.7e-09 63.9 88 42.0
Medtr6g008210 Medicago truncatula HOM05D002495 ORTHO05D002704 8.7e-09 63.9 89 39.3
Haze_14627 Corylus avellana HOM05D002495 ORTHO05D002704 1.1e-08 63.5 88 42.0
Hund20035 Selenicereus undatus HOM05D002495 ORTHO05D002704 1.9e-08 62.8 88 43.2
HanXRQChr03g0089931 Helianthus annuus HOM05D002495 ORTHO05D002704 2.5e-08 62.4 91 37.4
MBI14_g12777_MAGBIO Magnolia biondii HOM05D002495 ORTHO05D002704 2.5e-08 62.4 89 38.2
EL10Ac2g03386 Beta vulgaris HOM05D002495 ORTHO05D002704 4.3e-08 61.6 86 39.5
Lsat_1_v5_gn_4_180681 Lactuca sativa HOM05D002495 ORTHO05D002704 7.3e-08 60.8 93 37.6
HPP92_017345 Vanilla planifolia HOM05D002495 ORTHO05D002704 7.3e-08 60.8 89 39.3
Duzib147G1487 Durio zibethinus HOM05D002495 ORTHO05D002704 1.3e-07 60.1 91 35.2
CDE06G1068 Ceratophyllum demersum HOM05D002495 ORTHO05D002704 2.1e-07 59.3 86 33.7
Dinv35021 Davidia involucrata HOM05D002495 ORTHO05D002704 3.6e-07 58.5 84 38.1
SGA_v2.0_scaffold36G14544 Striga asiatica HOM05D002495 ORTHO05D002704 1.4e-06 56.6 43 62.8
ATR0580G395 Amborella trichopoda HOM05D002495 ORTHO05D002704 5.3e-06 54.7 88 31.8


User provided reference genes

Program Settings