Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 2.3e-123 445.7 238 100.0
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.8e-68 262.7 251 62.2
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 5.7e-66 255.0 249 63.1
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 6.6e-62 241.5 253 56.5
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.2e-60 237.3 247 56.7
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 6.1e-60 235.0 247 54.7
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 2.3e-59 233.0 251 54.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.9e-56 223.4 244 56.6
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.4e-56 223.0 240 56.7
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.4e-56 223.0 240 56.7
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.1e-56 222.2 241 57.7
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.1e-56 222.2 241 57.7
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 9.2e-56 221.1 250 56.0
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 2.0e-55 219.9 234 53.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.7e-55 219.5 252 56.0
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.3e-54 217.2 244 53.7
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.3e-54 217.2 257 49.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.7e-54 216.9 253 48.6
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 2.3e-54 216.5 257 52.5
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.5e-53 213.8 251 49.4
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.3e-53 212.6 250 51.6
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 3.3e-53 212.6 250 53.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 2.1e-52 209.9 253 50.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 3.6e-52 209.1 254 48.8
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 3.6e-52 209.1 241 55.2
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.6e-52 209.1 250 53.6
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 3.6e-52 209.1 251 53.0
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 6.2e-52 208.4 242 49.2
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 8.0e-52 208.0 251 51.4
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 8.0e-52 208.0 171 66.7
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 8.0e-52 208.0 263 51.7
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.4e-51 207.2 256 47.7
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.4e-51 207.2 246 52.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 5.2e-51 205.3 249 50.6
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.2e-50 204.1 254 49.6
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.2e-50 204.1 247 51.0
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 2.0e-50 203.4 216 56.9
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 2.0e-50 203.4 277 50.5
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 2.0e-50 203.4 251 52.6
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 9.8e-50 201.1 254 47.6
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.9e-49 199.5 254 45.7
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 4.9e-49 198.7 243 52.3
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.9e-49 198.7 253 53.8
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.9e-49 198.7 255 46.7
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.9e-49 198.7 253 51.4
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.4e-48 197.2 252 50.8
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.9e-48 196.8 251 48.6
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.9e-48 196.8 253 45.8
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.9e-48 196.8 248 53.6
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.4e-48 196.4 264 46.2
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 3.2e-48 196.1 264 47.0
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 3.2e-48 196.1 253 46.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 7.0e-48 194.9 248 47.6
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.2e-47 194.1 252 53.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.1e-47 193.4 255 45.5
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.1e-47 193.4 250 49.2
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.7e-47 193.0 276 49.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.6e-47 192.2 246 48.4
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 6.0e-47 191.8 263 46.4
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 3.0e-46 189.5 252 50.0
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 3.0e-46 189.5 259 50.6
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 3.9e-46 189.1 251 51.0
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.9e-46 189.1 202 58.4
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 5.1e-46 188.7 176 58.0
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.1e-46 188.7 259 47.1
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 8.6e-46 188.0 273 49.5
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 8.6e-46 188.0 243 47.7
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-45 187.6 262 47.7
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.1e-45 187.6 261 46.7
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.9e-45 186.8 254 48.4
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.5e-45 186.4 253 47.8
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.5e-45 186.4 289 47.1
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 3.3e-45 186.0 255 49.0
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.3e-45 185.7 260 46.9
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.3e-45 185.7 260 46.9
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.6e-45 185.3 260 46.9
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 7.3e-45 184.9 274 44.9
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.6e-44 183.7 238 49.6
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 2.8e-44 183.0 253 47.8
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 2.8e-44 183.0 254 44.9
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 3.6e-44 182.6 263 47.5
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 3.6e-44 182.6 260 46.9
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 4.7e-44 182.2 251 43.0
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.7e-44 182.2 252 48.0
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 6.2e-44 181.8 244 48.4
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 8.1e-44 181.4 265 45.7
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 8.1e-44 181.4 265 45.7
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.1e-43 181.0 263 46.0
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.1e-43 181.0 252 47.6
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.1e-43 181.0 255 48.6
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.8e-43 180.3 259 45.9
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 4.0e-43 179.1 313 41.9
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 6.8e-43 178.3 258 46.1
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 6.8e-43 178.3 188 55.9
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.9e-43 177.9 253 48.2
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.2e-42 177.6 265 44.9
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.2e-42 177.6 252 48.4
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.5e-42 177.2 255 46.3
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.5e-42 177.2 256 45.7
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.5e-42 177.2 266 46.2
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 2.0e-42 176.8 250 47.6
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.6e-42 176.4 245 46.1
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.4e-42 176.0 263 44.9
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.4e-42 175.6 206 48.1
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 7.5e-42 174.9 241 48.5
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.2e-41 173.3 265 46.8
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.2e-41 173.3 255 43.5
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 4.9e-41 172.2 243 46.5
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 4.9e-41 172.2 164 56.7
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 6.4e-41 171.8 166 53.0
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 3.2e-40 169.5 249 47.8
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 4.1e-40 169.1 164 54.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.2e-39 167.5 252 45.6
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.6e-39 167.2 263 41.4
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 2.1e-39 166.8 162 54.3
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.7e-38 163.7 146 65.8
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 6.6e-38 161.8 243 47.3
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 6.6e-38 161.8 284 41.2
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 6.6e-38 161.8 259 44.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 8.6e-38 161.4 256 41.4
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-37 161.0 258 41.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.3e-37 159.5 368 36.7
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.8e-35 153.7 242 42.1
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.4e-34 149.1 361 36.8
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 9.9e-34 147.9 150 56.0
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.8e-28 129.8 233 42.5
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-27 127.5 215 38.6
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 3.4e-26 122.9 198 39.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.8e-25 119.4 242 35.5
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 9.3e-24 114.8 129 52.7
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 5.1e-22 109.0 146 41.8
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 6.6e-22 108.6 122 57.4
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.1e-21 107.8 228 40.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 6.9e-19 98.6 163 39.9
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 9.0e-19 98.2 141 46.1
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.2e-18 97.8 60 73.3
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.5e-18 97.4 92 51.1
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 5.8e-18 95.5 59 76.3
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.4e-16 90.9 126 44.4
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 7.1e-16 88.6 138 38.4
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.2e-15 87.8 125 48.8
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 2.1e-15 87.0 174 39.1
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 4.8e-12 75.9 130 44.6
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.1e-11 74.7 168 36.9
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 4.5e-10 69.3 65 58.5
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.0e-09 68.2 61 54.1
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.0e-09 68.2 61 54.1
Rhsim01G0128100 Rhododendron simsii HOM05D033462 ORTHO05D011520 6.7e-06 55.5 130 36.9


User provided reference genes

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