Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 1.0e-251 872.8 423 100.0
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 2.7e-167 592.4 535 62.2
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 2.2e-153 546.2 539 55.1
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 4.8e-148 528.5 538 55.0
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 4.8e-140 501.9 539 50.8
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.4e-139 499.6 547 51.0
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 9.0e-139 497.7 539 50.3
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 1.0e-137 494.2 506 52.8
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 1.3e-137 493.8 536 51.3
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 2.2e-137 493.0 513 51.3
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.9e-137 492.7 515 51.8
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 5.0e-137 491.9 553 49.5
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.5e-136 489.6 492 52.0
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 2.5e-136 489.6 493 53.1
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 4.2e-136 488.8 496 53.2
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 5.5e-136 488.4 493 52.5
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 3.9e-134 482.3 494 52.2
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 5.1e-134 481.9 500 50.8
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 8.8e-134 481.1 533 50.7
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 3.3e-133 479.2 526 49.6
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 7.4e-133 478.0 485 53.4
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 1.3e-132 477.2 487 52.0
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 1.3e-132 477.2 493 51.1
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.3e-132 477.2 500 50.8
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.7e-132 476.9 493 50.9
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 2.8e-132 476.1 487 51.7
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 3.7e-132 475.7 490 51.4
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 3.7e-132 475.7 491 50.7
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 8.2e-132 474.6 500 50.4
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 1.8e-131 473.4 491 51.7
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 6.9e-131 471.5 493 50.7
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 9.1e-131 471.1 486 51.9
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 9.1e-131 471.1 489 50.7
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 9.1e-131 471.1 494 51.8
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 4.5e-130 468.8 486 51.4
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 7.7e-130 468.0 541 50.6
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 1.0e-129 467.6 489 50.9
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.0e-129 467.6 487 51.1
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 1.3e-129 467.2 487 51.3
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 1.7e-129 466.8 487 51.1
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 6.5e-129 464.9 541 48.2
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.5e-129 464.9 507 50.1
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 1.1e-128 464.2 538 48.7
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 1.4e-128 463.8 491 49.9
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 2.5e-128 463.0 502 50.4
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 7.2e-128 461.5 487 50.9
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 9.4e-128 461.1 505 49.9
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 2.7e-127 459.5 490 50.4
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.6e-127 459.1 489 51.5
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 3.6e-127 459.1 486 52.1
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.7e-127 458.8 487 51.7
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 4.7e-127 458.8 542 48.7
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 6.1e-127 458.4 487 50.9
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.0e-126 457.6 487 51.1
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.4e-126 457.2 493 51.3
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.4e-126 457.2 512 48.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 1.4e-126 457.2 487 50.5
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 2.3e-126 456.4 538 48.3
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 3.0e-126 456.1 487 51.3
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.9e-126 455.7 487 51.5
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 5.1e-126 455.3 486 50.2
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 6.7e-126 454.9 485 50.1
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 1.1e-125 454.1 489 50.7
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.1e-125 454.1 494 50.4
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 7.4e-125 451.4 488 50.4
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 6.3e-124 448.4 487 50.5
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 1.5e-122 443.7 499 48.9
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.5e-122 443.7 493 49.5
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 1.5e-122 443.7 464 51.3
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 1.5e-122 443.7 524 48.1
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 2.0e-122 443.4 490 50.4
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 2.6e-122 443.0 496 50.2
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 3.4e-122 442.6 496 49.6
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.7e-122 441.4 492 48.4
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 1.3e-121 440.7 470 51.3
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 1.7e-121 440.3 499 49.5
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 3.8e-121 439.1 502 49.2
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 4.2e-120 435.6 487 49.1
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.2e-119 434.1 504 48.6
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 2.7e-119 433.0 504 48.8
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 3.0e-118 429.5 524 45.2
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.7e-116 423.7 496 47.2
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 9.1e-115 417.9 386 57.0
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.3e-113 414.1 522 46.7
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.3e-113 414.1 491 47.0
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 2.9e-113 412.9 485 47.4
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 4.2e-112 409.1 471 48.0
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 8.0e-111 404.8 485 46.4
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 4.0e-110 402.5 460 50.4
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 4.0e-110 402.5 425 52.5
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 8.8e-110 401.4 475 48.2
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 4.8e-108 395.6 565 43.0
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 1.8e-107 393.7 475 47.4
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 4.0e-102 375.9 425 49.4
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 1.3e-100 370.9 512 40.6
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.6e-98 364.0 513 40.9
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.6e-98 364.0 513 40.9
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 3.0e-94 349.7 419 48.4
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 7.5e-93 345.1 383 50.7
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 7.8e-90 335.1 464 41.6
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 1.4e-86 324.3 437 44.6
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 5.2e-86 322.4 381 47.8
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.6e-85 320.1 393 47.1
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 2.1e-79 300.4 381 45.1
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 9.8e-77 291.6 359 47.1
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 3.0e-73 280.0 381 44.4
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 5.1e-73 279.3 235 59.6
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 2.0e-69 267.3 343 46.4
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.1e-66 257.3 380 41.6
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 2.9e-60 236.9 490 35.7
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 4.9e-60 236.1 199 63.3
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.4e-59 232.6 224 54.0
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.6e-58 231.1 452 36.1
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 1.6e-50 204.5 187 56.7
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 3.5e-50 203.4 189 56.1
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 4.3e-48 196.4 198 52.5
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.5e-42 176.8 127 59.8
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 3.5e-42 176.8 444 30.0
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 3.5e-42 176.8 167 50.9
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 1.0e-41 175.3 145 62.1
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 5.6e-40 169.5 156 55.1
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.7e-39 166.8 104 74.0
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 4.6e-26 123.2 107 62.6
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 4.6e-26 123.2 107 62.6
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 4.6e-26 123.2 107 62.6
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 5.1e-25 119.8 89 57.3
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 9.0e-22 109.0 76 65.8
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.2e-19 99.4 75 62.7
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.2e-18 98.6 95 55.8
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.7e-18 97.4 85 51.8
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.7e-15 88.2 191 37.2
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 2.2e-15 87.8 486 23.0
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 4.4e-08 63.5 77 50.6


User provided reference genes

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