Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 2.7e-85 318.9 199 100.0
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 3.8e-23 112.5 220 40.5
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.7e-18 97.1 208 35.1
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.7e-18 97.1 212 36.8
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 6.4e-18 95.1 218 37.2
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 9.2e-17 91.3 207 35.3
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 1.6e-16 90.5 216 35.6
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 2.7e-16 89.7 132 41.7
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 2.7e-16 89.7 207 36.7
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 5.9e-16 88.6 154 37.0
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 3.0e-15 86.3 166 39.2
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 1.5e-14 84.0 103 43.7
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.9e-14 83.6 107 47.7
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 3.3e-14 82.8 180 37.2
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 4.3e-14 82.4 100 48.0
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 1.2e-13 80.9 114 44.7
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 1.2e-13 80.9 137 37.2
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.6e-13 80.5 109 45.0
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 1.6e-13 80.5 120 42.5
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 2.8e-13 79.7 192 32.3
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 4.7e-13 79.0 117 41.0
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 4.7e-13 79.0 152 34.2
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 4.7e-13 79.0 160 36.9
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 4.7e-13 79.0 103 44.7
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 6.2e-13 78.6 107 45.8
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 6.2e-13 78.6 108 46.3
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 1.1e-12 77.8 106 42.5
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 1.4e-12 77.4 102 47.1
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 1.4e-12 77.4 145 40.0
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 1.8e-12 77.0 162 40.1
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.3e-12 76.6 173 34.7
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 2.3e-12 76.6 101 43.6
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 3.1e-12 76.3 94 44.7
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 3.1e-12 76.3 146 38.4
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 4.0e-12 75.9 104 42.3
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 4.0e-12 75.9 102 42.2
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 4.0e-12 75.9 103 45.6
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 6.8e-12 75.1 99 43.4
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 8.9e-12 74.7 212 31.1
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 8.9e-12 74.7 102 42.2
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.2e-11 74.3 114 37.7
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.2e-11 74.3 143 35.0
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 1.5e-11 73.9 120 42.5
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 2.0e-11 73.6 133 37.6
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 2.6e-11 73.2 180 35.6
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 2.6e-11 73.2 195 28.7
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.6e-11 73.2 162 34.6
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 3.4e-11 72.8 105 42.9
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 4.4e-11 72.4 117 40.2
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 4.4e-11 72.4 207 39.1
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 4.4e-11 72.4 87 50.6
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 5.8e-11 72.0 212 29.7
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 5.8e-11 72.0 161 34.2
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 5.8e-11 72.0 108 41.7
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 7.5e-11 71.6 147 36.7
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 7.5e-11 71.6 194 28.9
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 7.5e-11 71.6 196 28.1
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 9.8e-11 71.2 108 38.0
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 9.8e-11 71.2 123 38.2
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.3e-10 70.9 111 40.5
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.3e-10 70.9 114 36.0
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 1.7e-10 70.5 63 57.1
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 1.7e-10 70.5 115 38.3
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 2.2e-10 70.1 55 61.8
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 2.9e-10 69.7 94 42.6
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 3.7e-10 69.3 141 36.9
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 3.7e-10 69.3 162 31.5
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 3.7e-10 69.3 114 42.1
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 4.9e-10 68.9 73 52.1
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 4.9e-10 68.9 213 30.0
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 6.4e-10 68.6 100 44.0
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 6.4e-10 68.6 205 28.3
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 8.3e-10 68.2 212 29.7
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.9e-09 67.0 103 37.9
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.9e-09 67.0 103 37.9
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 2.4e-09 66.6 122 38.5
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 2.4e-09 66.6 122 38.5
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 2.4e-09 66.6 92 44.6
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 4.1e-09 65.9 205 27.3
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 4.1e-09 65.9 121 38.0
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 7.0e-09 65.1 53 58.5
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 9.2e-09 64.7 112 40.2
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 9.2e-09 64.7 125 37.6
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 1.6e-08 63.9 72 41.7
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 1.6e-08 63.9 103 35.9
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 2.7e-08 63.2 109 39.4
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 3.5e-08 62.8 112 39.3
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 3.5e-08 62.8 110 38.2
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 4.6e-08 62.4 215 27.9
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 7.8e-08 61.6 81 45.7
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 1.0e-07 61.2 113 32.7
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 1.0e-07 61.2 128 35.2
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 1.3e-07 60.8 97 41.2
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 1.7e-07 60.5 110 39.1
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 1.7e-07 60.5 110 39.1
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 2.3e-07 60.1 108 38.0
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.3e-07 60.1 53 58.5
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 3.9e-07 59.3 57 49.1
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 5.0e-07 58.9 102 40.2
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 8.6e-07 58.2 120 31.7
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 8.6e-07 58.2 109 39.4
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.5e-06 57.4 121 33.1
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 1.9e-06 57.0 60 45.0
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 2.5e-06 56.6 108 37.0
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 2.5e-06 56.6 108 37.0
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 5.6e-06 55.5 131 32.8
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 5.6e-06 55.5 58 50.0
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 9.5e-06 54.7 96 35.4
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 9.5e-06 54.7 96 35.4


User provided reference genes

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