Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold87G27127 Striga asiatica HOM05D003830 ORTHO05D004446 0.0e+00 1568.9 840 100.0
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 2.5e-257 892.5 975 59.2
Migut.K00697 Erythranthe guttata HOM05D003830 ORTHO05D004446 2.1e-131 474.2 1083 39.0
MSTRG.7981 Avicennia marina HOM05D003830 ORTHO05D004446 6.2e-131 472.6 1142 37.5
MSTRG.524 Avicennia marina HOM05D003830 ORTHO05D004446 5.2e-130 469.5 1157 37.3
SalBow2G2689 Salvia bowleyana HOM05D003830 ORTHO05D004446 7.6e-129 465.7 1164 37.6
Migut.E00239 Erythranthe guttata HOM05D003830 ORTHO05D004446 1.2e-123 448.4 1027 40.4
Oeu038669.1 Olea europaea HOM05D003830 ORTHO05D004446 9.9e-113 412.1 1173 35.7
Cc11_g16600 Coffea canephora HOM05D003830 ORTHO05D004446 1.8e-109 401.4 1163 35.1
Oeu041685.1 Olea europaea HOM05D003830 ORTHO05D004446 9.6e-108 395.6 1169 35.3
Dinv10992 Davidia involucrata HOM05D003830 ORTHO05D004446 6.9e-106 389.4 1179 35.6
Hma1.2p1_0167F.1_g073780 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 1.8e-101 374.8 1128 36.1
Sopen05g009770 Solanum pennellii HOM05D003830 ORTHO05D004446 4.3e-100 370.2 1144 35.3
Solyc05g014640.3 Solanum lycopersicum HOM05D003830 ORTHO05D004446 5.6e-100 369.8 1142 35.4
PGSC0003DMG400017461 Solanum tuberosum HOM05D003830 ORTHO05D004446 2.4e-98 364.4 1147 34.6
Peaxi162Scf00128g00924 Petunia axillaris HOM05D003830 ORTHO05D004446 1.0e-96 359.0 1129 34.8
DCAR_024085 Daucus carota HOM05D003830 ORTHO05D004446 6.5e-96 356.3 1182 34.4
Actinidia25761 Actinidia chinensis HOM05D003830 ORTHO05D004446 1.0e-93 349.0 1159 33.6
Manes.13G015800 Manihot esculenta HOM05D003830 ORTHO05D004446 1.5e-92 345.1 1186 34.1
GSVIVG01010345001 Vitis vinifera HOM05D003830 ORTHO05D004446 1.5e-92 345.1 1195 33.8
Thecc.02G274300 Theobroma cacao HOM05D003830 ORTHO05D004446 4.3e-92 343.6 1180 34.6
SalBow8G5205 Salvia bowleyana HOM05D003830 ORTHO05D004446 2.1e-91 341.3 1102 33.0
Oeu056685.2 Olea europaea HOM05D003830 ORTHO05D004446 4.8e-91 340.1 1252 32.5
Nitab4.5_0000240g0070 Nicotiana tabacum HOM05D003830 ORTHO05D004446 8.2e-91 339.3 1099 34.2
CAN.G692.1 Capsicum annuum HOM05D003830 ORTHO05D004446 4.1e-90 337.0 1153 33.0
Dinv14800 Davidia involucrata HOM05D003830 ORTHO05D004446 6.9e-90 336.3 1145 34.3
Nitab4.5_0011772g0020 Nicotiana tabacum HOM05D003830 ORTHO05D004446 6.9e-90 336.3 1102 34.2
Gorai.005G171400 Gossypium raimondii HOM05D003830 ORTHO05D004446 7.6e-89 332.8 1156 34.4
Gohir.A03G128600 Gossypium hirsutum HOM05D003830 ORTHO05D004446 5.0e-88 330.1 1163 34.4
Gohir.D02G152400 Gossypium hirsutum HOM05D003830 ORTHO05D004446 8.5e-88 329.3 1160 33.6
COL.COLO4_23621 Corchorus olitorius HOM05D003830 ORTHO05D004446 7.9e-86 322.8 1159 34.3
TAR622G0818 Trochodendron aralioides HOM05D003830 ORTHO05D004446 1.8e-85 321.6 1190 33.9
Manes.12G014700 Manihot esculenta HOM05D003830 ORTHO05D004446 2.3e-85 321.2 1188 32.2
Duzib248G1684 Durio zibethinus HOM05D003830 ORTHO05D004446 6.7e-85 319.7 1174 32.3
CSS0000134 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 5.7e-84 316.6 1188 32.0
Duzib268G1283 Durio zibethinus HOM05D003830 ORTHO05D004446 2.2e-83 314.7 1126 34.2
TAR374G0580 Trochodendron aralioides HOM05D003830 ORTHO05D004446 2.2e-83 314.7 1195 33.5
Atru.chr11.2246 Acer truncatum HOM05D003830 ORTHO05D004446 2.8e-83 314.3 1176 31.5
Atru.chr11.2261 Acer truncatum HOM05D003830 ORTHO05D004446 2.8e-83 314.3 1176 31.5
ECA234G2423 Erigeron canadensis HOM05D003830 ORTHO05D004446 8.2e-83 312.8 1056 33.5
Prupe.1G233200 Prunus persica HOM05D003830 ORTHO05D004446 4.5e-81 307.0 1211 32.5
Ciclev10030548m.g Citrus clementina HOM05D003830 ORTHO05D004446 7.7e-81 306.2 1202 33.1
Cfa009315 Carpinus fangiana HOM05D003830 ORTHO05D008363 1.0e-80 305.8 1204 33.4
Glyma.11G248200 Glycine max HOM05D003830 ORTHO05D004446 1.3e-80 305.4 1165 32.2
Phvul.001G259600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 1.3e-80 305.4 1184 30.8
Aqoxy3G01454 Aquilegia oxysepala HOM05D003830 ORTHO05D004446 1.7e-80 305.1 1190 30.3
Nn4g22404 Nelumbo nucifera HOM05D003830 ORTHO05D004446 2.2e-80 304.7 1241 30.9
CiPaw.05G115100 Carya illinoinensis HOM05D003830 ORTHO05D004446 8.5e-80 302.8 1195 32.9
HanXRQChr17g0569161 Helianthus annuus HOM05D003830 ORTHO05D004446 1.6e-78 298.5 1025 33.9
Lalb_Chr23g0277961 Lupinus albus HOM05D003830 ORTHO05D004446 3.0e-77 294.3 1151 31.4
Sabra10G0048900 Salix brachista HOM05D003830 ORTHO05D004446 3.0e-77 294.3 1242 31.2
Glyma.18G009000 Glycine max HOM05D003830 ORTHO05D004446 6.7e-77 293.1 1171 32.7
Nn3g16538 Nelumbo nucifera HOM05D003830 ORTHO05D004446 2.0e-76 291.6 1233 30.7
TWI75G0226 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 5.7e-76 290.0 1174 33.3
VMungo0251G0774 Vigna mungo HOM05D003830 ORTHO05D004446 2.2e-75 288.1 1187 30.2
TAR629G0808 Trochodendron aralioides HOM05D003830 ORTHO05D004446 3.7e-75 287.3 1184 31.7
Phvul.002G176100 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 1.8e-74 285.0 1188 30.4
HanXRQChr08g0207491 Helianthus annuus HOM05D003830 ORTHO05D004446 2.4e-74 284.6 1063 33.8
TPR.G22439 Trifolium pratense HOM05D003830 ORTHO05D004446 2.4e-74 284.6 1201 30.5
Eucgr.H04665 Eucalyptus grandis HOM05D003830 ORTHO05D004446 3.1e-74 284.3 1160 32.4
Lalb_Chr08g0230701 Lupinus albus HOM05D003830 ORTHO05D004446 3.1e-74 284.3 1176 31.1
VMungo1383G3029 Vigna mungo HOM05D003830 ORTHO05D004446 2.0e-73 281.6 1181 30.4
Sc11g0000660 Simmondsia chinensis HOM05D003830 ORTHO05D004446 1.3e-72 278.9 1130 30.0
EL10Ac6g13438 Beta vulgaris HOM05D003830 ORTHO05D004446 5.0e-72 276.9 1161 31.8
Ca_16482_v3 Cicer arietinum L. HOM05D003830 ORTHO05D004446 5.0e-72 276.9 1190 29.6
QL03p054734 Quercus lobata HOM05D003830 ORTHO05D004446 5.0e-72 276.9 1195 31.2
ClCG08G017300 Citrullus lanatus HOM05D003830 ORTHO05D004446 1.4e-71 275.4 1201 31.1
MBI08_g41743_MAGBIO Magnolia biondii HOM05D003830 ORTHO05D004446 5.5e-71 273.5 1152 29.9
Lj6C822T9 Lonicera japonica HOM05D003830 ORTHO05D004446 7.2e-71 273.1 472 47.9
CSS0032396 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 9.4e-71 272.7 518 44.6
Potri.010G056200 Populus trichocarpa HOM05D003830 ORTHO05D004446 5.2e-69 266.9 1229 30.8
Rhsim12G0030500 Rhododendron simsii HOM05D003830 ORTHO05D004446 1.5e-68 265.4 1204 30.3
CsaV3_2G025330 Cucumis sativus L. HOM05D003830 ORTHO05D004446 3.7e-67 260.8 1172 31.1
Potri.008G178600 Populus trichocarpa HOM05D003830 ORTHO05D004446 6.3e-67 260.0 1198 29.0
AUR62005571 Chenopodium quinoa HOM05D003830 ORTHO05D004446 1.8e-66 258.5 1153 31.5
AUR62024159 Chenopodium quinoa HOM05D003830 ORTHO05D004446 1.8e-66 258.5 1154 31.0
Sed0027794 Sechium edule HOM05D003830 ORTHO05D004446 1.8e-66 258.5 1163 31.7
RcHm_v2.0_Chr4g0431121 Rosa chinensis HOM05D003830 ORTHO05D004446 2.4e-66 258.1 1234 28.9
PGR102G1232 Punica granatum HOM05D003830 ORTHO05D004446 5.3e-66 256.9 1154 30.2
Duzib251G0504 Durio zibethinus HOM05D003830 ORTHO05D004446 9.1e-66 256.1 1092 33.5
Sabra08G0136300 Salix brachista HOM05D003830 ORTHO05D004446 2.6e-65 254.6 1203 29.1
arahy.Tifrunner.gnm1.ann1.D6D033 Arachis hypogaea HOM05D003830 ORTHO05D004446 3.5e-65 254.2 1206 29.1
arahy.Tifrunner.gnm1.ann1.ZS76EK Arachis hypogaea HOM05D003830 ORTHO05D004446 4.5e-65 253.8 1217 28.5
TWI18G0501 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 5.9e-65 253.4 1145 31.4
ECA233G0646 Erigeron canadensis HOM05D003830 ORTHO05D004446 2.9e-64 251.1 1070 31.9
PSO063G3359 Papaver somniferum HOM05D003830 ORTHO05D004446 8.5e-64 249.6 1146 31.2
Lj4g0001101 Lotus japonicus HOM05D003830 ORTHO05D004446 1.5e-63 248.8 1193 29.8
Psat5g094600 Pisum sativum HOM05D003830 ORTHO05D004446 2.5e-63 248.1 1042 30.2
MD13G1112200 Malus domestica HOM05D003830 ORTHO05D004446 7.2e-63 246.5 1267 30.9
Rhsim12G0031400 Rhododendron simsii HOM05D003830 ORTHO05D004446 7.2e-63 246.5 518 42.3
MELO3C010729.2 Cucumis melo HOM05D003830 ORTHO05D004446 2.1e-62 245.0 1168 30.4
PSO782G2541 Papaver somniferum HOM05D003830 ORTHO05D004446 2.7e-62 244.6 1158 30.1
Lsat_1_v5_gn_8_150260 Lactuca sativa HOM05D003830 ORTHO05D004446 1.8e-61 241.9 1033 31.9
FAN17G1537 Fragaria x ananassa HOM05D003830 ORTHO05D004446 1.7e-59 235.3 1240 29.0
DCAR_007014 Daucus carota HOM05D003830 ORTHO05D004446 1.1e-58 232.6 1179 29.2
vmacro01085 Vaccinium macrocarpon HOM05D003830 ORTHO05D004446 1.1e-58 232.6 550 40.0
Hma1.2p1_1340F.1_g276740 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 1.8e-58 231.9 380 49.5
TWI36G0084 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 9.1e-58 229.6 1181 30.4
FvH4_4g24320 Fragaria vesca HOM05D003830 ORTHO05D004446 7.7e-57 226.5 1245 28.7
FAN22G2024 Fragaria x ananassa HOM05D003830 ORTHO05D004446 1.3e-56 225.7 1239 28.9
CARHR027310 Cardamine hirsuta HOM05D003830 ORTHO05D004446 2.5e-55 221.5 1174 28.9
FAN12G3820 Fragaria x ananassa HOM05D003830 ORTHO05D004446 7.2e-55 219.9 1245 28.4
MD16G1111800 Malus domestica HOM05D003830 ORTHO05D004446 1.2e-54 219.2 534 41.0
Glyma.08G102200 Glycine max HOM05D003830 ORTHO05D004446 1.6e-54 218.8 1190 30.3
CANSAT01G2001 Cannabis sativa HOM05D003830 ORTHO05D004446 7.5e-52 209.9 1230 28.0
Lsat_1_v5_gn_4_2860 Lactuca sativa HOM05D003830 ORTHO05D004446 2.8e-51 208.0 805 31.9
AT1G27850 Arabidopsis thaliana HOM05D003830 ORTHO05D004446 1.1e-50 206.1 1161 28.8
Aa31sc109G20 Aethionema arabicum HOM05D003830 ORTHO05D004446 1.0e-48 199.5 1178 27.6
unitig_699.g19949 Utricularia gibba HOM05D003830 ORTHO05D004446 1.0e-48 199.5 559 35.4
ATR0609G075 Amborella trichopoda HOM05D003830 ORTHO05D004446 1.7e-48 198.7 543 37.0
Hund06065 Selenicereus undatus HOM05D003830 ORTHO05D004446 6.5e-48 196.8 1231 27.8
Carub.0001s2631 Capsella rubella HOM05D003830 ORTHO05D004446 5.5e-47 193.7 1162 29.2
BolC5t31369H Brassica oleracea HOM05D003830 ORTHO05D004446 8.0e-46 189.9 1160 29.1
A08p26030 Brassica napus HOM05D003830 ORTHO05D004446 1.8e-45 188.7 1101 28.0
Sp1g24060 Schrenkiella parvula HOM05D003830 ORTHO05D004446 2.3e-45 188.3 1181 27.7
BolC3t19710H Brassica oleracea HOM05D003830 ORTHO05D004446 5.2e-45 187.2 1096 29.4
Thhalv10006616m.g Eutrema salsugineum HOM05D003830 ORTHO05D004446 5.2e-45 187.2 1157 26.4
C03p74620 Brassica napus HOM05D003830 ORTHO05D004446 2.0e-44 185.3 1101 27.5
AL1G41340 Arabidopsis lyrata HOM05D003830 ORTHO05D004446 2.6e-44 184.9 1166 28.9
BraA09t39341Z Brassica rapa HOM05D003830 ORTHO05D004446 2.6e-44 184.9 1145 29.2
BraA08t34553Z Brassica rapa HOM05D003830 ORTHO05D004446 9.8e-44 183.0 1095 27.5
Os12g0239000 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 2.2e-43 181.8 495 39.4
CDE04G3030 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 5.4e-42 177.2 348 42.0
A09p38310 Brassica napus HOM05D003830 ORTHO05D004446 4.5e-41 174.1 1165 28.5
Cpa.g.c26951.1 Carica papaya HOM05D003830 ORTHO05D004446 4.5e-41 174.1 1035 28.8
C05p26490 Brassica napus HOM05D003830 ORTHO05D004446 5.9e-41 173.7 1193 27.8
BcaC05g26779 Brassica carinata HOM05D003830 ORTHO05D004446 2.9e-40 171.4 1168 27.2
Lalb_Chr11g0075691 Lupinus albus HOM05D003830 ORTHO05D004446 3.3e-39 167.9 358 40.2
Os12g0239200 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 1.6e-38 165.6 1207 25.9
arahy.Tifrunner.gnm1.ann1.MTFP9U Arachis hypogaea HOM05D003830 ORTHO05D004446 3.6e-38 164.5 1103 27.0
unitig_747.g21131 Utricularia gibba HOM05D003830 ORTHO05D004446 6.1e-38 163.7 928 27.9
HPP92_004598 Vanilla planifolia HOM05D003830 ORTHO05D004446 1.3e-35 156.0 1188 27.1
Zm00001eb133500 Zea mays HOM05D003830 ORTHO05D004446 2.2e-35 155.2 565 32.2
arahy.Tifrunner.gnm1.ann1.JB8DT0 Arachis hypogaea HOM05D003830 ORTHO05D004446 1.1e-34 152.9 1146 26.5
THA.LOC104825519 Tarenaya hassleriana HOM05D003830 ORTHO05D004446 2.4e-34 151.8 1135 27.1
DCAR_013711 Daucus carota HOM05D003830 ORTHO05D004446 3.5e-33 147.9 564 31.4
SHI17938 Sapria himalayana HOM05D003830 ORTHO05D004446 5.0e-32 144.1 983 26.9
SEGI_06277 Sequoiadendron giganteum HOM05D003830 ORTHO05D004446 3.3e-31 141.4 527 32.8
Actinidia30673 Actinidia chinensis HOM05D003830 ORTHO05D004446 3.6e-30 137.9 418 34.2
PSO063G5558 Papaver somniferum HOM05D003830 ORTHO05D004446 6.2e-30 137.1 1056 25.4
CDE07G1392 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 2.3e-29 135.2 321 38.9
Actinidia33257 Actinidia chinensis HOM05D003830 ORTHO05D004446 4.0e-29 134.4 716 29.2
unitig_22.g6413 Utricularia gibba HOM05D003830 ORTHO05D004446 7.5e-28 130.2 443 33.6
Zm00001eb409890 Zea mays HOM05D003830 ORTHO05D004446 4.9e-27 127.5 1163 25.8
Actinidia30674 Actinidia chinensis HOM05D003830 ORTHO05D004446 8.3e-27 126.7 232 45.3
Hma1.2p1_1340F.1_g276750 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 8.3e-27 126.7 682 27.7
Actinidia30675 Actinidia chinensis HOM05D003830 ORTHO05D004446 4.4e-20 104.4 91 60.4
BcaNung07311 Brassica carinata HOM05D003830 ORTHO05D004446 7.8e-17 93.6 440 30.2
Lj6C822T10 Lonicera japonica HOM05D003830 ORTHO05D004446 6.6e-16 90.5 130 46.9
HPP92_006184 Vanilla planifolia HOM05D003830 ORTHO05D004446 2.8e-14 85.1 469 27.7
Phvul.002G093600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 1.1e-13 83.2 168 37.5
CDE04G0036 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 1.8e-13 82.4 207 34.8
Lalb_Chr11g0075701 Lupinus albus HOM05D003830 ORTHO05D004446 3.4e-12 78.2 609 25.5
Zm00001eb133580 Zea mays HOM05D003830 ORTHO05D004446 7.6e-12 77.0 276 30.4
CDE07G0717 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 1.3e-11 76.3 313 28.8
AagrBONN_evm.TU.Sc2ySwM_228.3275 Anthoceros agrestis HOM05D003830 ORTHO05D001345 1.7e-11 75.9 115 39.1
CSS0021953 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 3.8e-11 74.7 248 37.1
Mapoly0001s0565 Marchantia polymorpha HOM05D003830 ORTHO05D004446 1.9e-10 72.4 163 35.6
Glyma.05G145400 Glycine max HOM05D003830 ORTHO05D004446 9.2e-10 70.1 852 25.0
unitig_747.g21132 Utricularia gibba HOM05D003830 ORTHO05D004446 4.6e-09 67.8 76 52.6
Cpa.g.sc19.190 Carica papaya HOM05D001930 ORTHO05D001345 3.9e-08 64.7 118 35.6
Nn2g13688 Nelumbo nucifera HOM05D001930 ORTHO05D001345 5.1e-08 64.3 494 26.7
CDE07G0205 Ceratophyllum demersum HOM05D001930 ORTHO05D001345 8.7e-08 63.5 102 39.2
SEGI_29321 Sequoiadendron giganteum HOM05D001930 ORTHO05D001345 8.7e-08 63.5 141 39.0
Dinv17980 Davidia involucrata HOM05D001930 ORTHO05D001345 1.5e-07 62.8 94 38.3
Rhsim03G0142000 Rhododendron simsii HOM05D001930 ORTHO05D001345 2.5e-07 62.0 136 36.0
ATR0618G241 Amborella trichopoda HOM05D001930 ORTHO05D001345 4.3e-07 61.2 160 33.1
Phvul.008G080400 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 7.3e-07 60.5 150 34.0
BcaC05g26601 Brassica carinata HOM05D003830 ORTHO05D004446 9.6e-07 60.1 285 28.1
MSTRG.27324 Avicennia marina HOM05D001930 ORTHO05D001345 1.2e-06 59.7 94 39.4
COL.COLO4_21250 Corchorus olitorius HOM05D004711 ORTHO05D005594 2.1e-06 58.9 142 32.4
Eucgr.G03055 Eucalyptus grandis HOM05D001930 ORTHO05D001345 2.1e-06 58.9 109 35.8
ClCG11G006220 Citrullus lanatus HOM05D001930 ORTHO05D001345 2.8e-06 58.5 92 38.0
Pp3c17_22500 Physcomitrium patens HOM05D003830 ORTHO05D004446 2.8e-06 58.5 167 36.5
Pp3c17_22550 Physcomitrium patens HOM05D003830 ORTHO05D004446 2.8e-06 58.5 167 36.5
Aqoxy2G00919 Aquilegia oxysepala HOM05D001930 ORTHO05D001345 3.6e-06 58.2 138 34.1
Glyma.09G272800 Glycine max HOM05D004711 ORTHO05D005594 3.6e-06 58.2 153 34.6
VMungo1383G3052 Vigna mungo HOM05D004711 ORTHO05D005594 3.6e-06 58.2 147 33.3
Sed0016379 Sechium edule HOM05D001930 ORTHO05D001345 4.7e-06 57.8 92 37.0
Cpa.g.c44110 Carica papaya HOM05D003830 ORTHO05D004446 6.2e-06 57.4 166 41.0
HanXRQChr08g0222141 Helianthus annuus HOM05D001930 ORTHO05D001345 6.2e-06 57.4 116 36.2
MD01G1132400 Malus domestica HOM05D001930 ORTHO05D001345 6.2e-06 57.4 158 34.2
Nn2g11456 Nelumbo nucifera HOM05D001930 ORTHO05D001345 6.2e-06 57.4 159 30.2


User provided reference genes

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