Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.8e-159 565.5 338 100.0
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.0e-112 409.8 346 76.6
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.4e-105 387.1 337 76.3
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 7.1e-102 374.8 336 73.8
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.6e-98 363.6 338 69.5
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.3e-95 354.0 344 71.8
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.3e-95 354.0 344 71.8
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.9e-94 350.1 336 70.2
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 5.4e-94 348.6 336 71.7
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.4e-94 348.6 353 67.1
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-92 344.0 359 66.6
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.5e-91 340.5 343 67.9
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.1e-90 336.7 336 68.8
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.8e-90 336.3 337 70.0
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 4.7e-90 335.5 355 66.5
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.4e-89 333.2 341 68.6
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 3.1e-89 332.8 348 67.8
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 4.0e-89 332.4 341 69.2
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 6.9e-89 331.6 336 68.8
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 2.0e-88 330.1 341 68.3
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 7.6e-88 328.2 336 68.5
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.7e-87 327.0 336 68.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.2e-87 326.6 336 68.5
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.2e-87 326.6 336 67.3
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.4e-87 324.7 347 67.7
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.9e-86 323.6 369 62.3
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 4.2e-86 322.4 374 63.6
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 7.1e-86 321.6 346 66.8
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 9.3e-86 321.2 278 79.1
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.2e-85 320.9 353 66.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.2e-85 320.9 341 67.4
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.6e-85 320.5 320 70.0
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.7e-85 319.7 341 67.4
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 7.8e-85 318.2 351 66.1
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.8e-85 318.2 354 66.1
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.0e-84 317.8 337 66.2
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.3e-84 317.4 325 68.6
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.3e-84 317.4 340 67.9
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.9e-84 315.8 336 66.7
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.9e-84 315.8 353 66.0
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 5.1e-84 315.5 336 66.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.6e-84 315.1 336 67.6
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 6.6e-84 315.1 336 67.6
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.1e-83 314.3 346 66.8
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 5.6e-83 312.0 346 65.0
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 9.6e-83 311.2 342 65.8
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 9.6e-83 311.2 341 65.4
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.8e-82 309.7 336 66.7
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.8e-82 309.7 338 65.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 3.6e-82 309.3 338 66.0
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.4e-81 307.4 336 65.8
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.8e-81 307.0 340 65.9
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.4e-81 306.6 366 60.9
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 4.0e-81 305.8 365 61.1
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.2e-80 304.3 337 62.9
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.5e-80 303.9 339 65.8
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 4.5e-80 302.4 339 64.6
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 4.5e-80 302.4 336 64.3
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.7e-79 300.4 338 63.9
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.7e-79 300.4 336 65.5
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 2.2e-79 300.1 344 62.8
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.9e-78 297.0 343 64.1
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.4e-78 296.6 335 63.3
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 5.4e-78 295.4 351 55.8
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.6e-77 293.9 348 62.4
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.6e-77 293.9 392 44.6
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.7e-77 293.1 353 60.1
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 2.7e-77 293.1 337 59.9
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.7e-77 293.1 335 64.5
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.0e-76 291.2 356 61.0
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 5.1e-76 288.9 341 63.6
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 5.1e-76 288.9 338 57.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.5e-75 287.3 335 62.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 4.3e-75 285.8 279 71.7
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.6e-74 283.9 345 62.6
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.7e-74 282.7 325 64.6
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 4.8e-74 282.3 353 61.8
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 4.8e-74 282.3 280 69.3
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 8.1e-74 281.6 300 68.3
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.4e-73 280.8 341 61.6
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.4e-73 280.8 348 60.9
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 4.0e-73 279.3 341 62.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 9.0e-73 278.1 353 61.8
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 9.0e-73 278.1 328 63.1
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 5.8e-72 275.4 239 59.4
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 3.8e-71 272.7 342 60.2
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 8.4e-71 271.6 337 57.6
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.1e-70 271.2 336 60.1
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 2.4e-70 270.0 336 62.2
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 6.7e-68 261.9 361 58.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.3e-67 259.2 224 59.4
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 7.4e-67 258.5 317 47.0
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-66 256.9 249 54.2
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 6.2e-66 255.4 310 63.5
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 6.2e-66 255.4 355 56.3
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 8.2e-66 255.0 228 57.9
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.1e-65 254.6 342 58.5
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.8e-65 253.8 309 64.1
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 4.0e-65 252.7 279 67.0
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.0e-64 250.4 281 57.7
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.0e-63 248.1 334 58.4
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.7e-63 247.3 178 68.5
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 5.5e-62 242.3 418 49.5
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.1e-61 240.4 333 58.6
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 4.6e-61 239.2 335 58.2
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.3e-58 231.1 238 73.1
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-58 230.7 334 57.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.8e-58 229.9 362 40.1
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 6.9e-57 225.3 168 62.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.2e-54 216.5 334 56.0
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 9.3e-54 214.9 298 59.4
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 3.6e-53 213.0 169 63.3
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.0e-47 194.9 183 58.5
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.3e-47 194.5 263 61.2
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 8.5e-47 191.8 189 81.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 8.8e-44 181.8 189 77.8
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.6e-43 180.3 239 66.1
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.1e-41 174.9 181 53.0
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 2.5e-38 163.7 286 52.8
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 6.1e-37 159.1 215 41.9
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 8.0e-37 158.7 279 53.0
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 4.8e-34 149.4 209 43.1
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.1e-33 148.3 123 56.1
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 3.6e-29 133.3 156 80.1
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.7e-27 125.9 196 41.3
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-26 124.8 138 87.7
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.3e-25 119.4 191 40.3
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.5e-23 112.5 172 40.7
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.1e-21 107.5 87 56.3
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.8e-20 102.4 126 85.7
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 3.7e-18 96.7 132 65.2
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 8.3e-18 95.5 108 47.2
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.4e-17 94.7 143 39.9
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.7e-16 89.0 122 83.6
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.6e-15 85.5 81 53.1
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 3.0e-12 77.0 86 51.2
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.8e-09 67.8 126 75.4
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 4.5e-08 63.2 48 72.9
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 4.5e-08 63.2 43 60.5
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 6.6e-07 59.3 37 73.0
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 6.6e-07 59.3 58 50.0
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.1e-06 58.5 42 57.1
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.1e-06 58.5 42 57.1
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.5e-06 57.4 51 58.8


User provided reference genes

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