Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold87G26959 Striga asiatica HOM05D002403 ORTHO05D051392 1.1e-116 423.3 223 100.0
SGA_v2.0_scaffold87G26965 Striga asiatica HOM05D002403 ORTHO05D002724 1.9e-47 193.4 101 97.0
SGA_v2.0_scaffold4G01983 Striga asiatica HOM05D002403 ORTHO05D002724 8.1e-46 188.0 101 97.0
SGA_v2.0_scaffold152G36884 Striga asiatica HOM05D002403 ORTHO05D051392 1.4e-42 177.2 99 92.9
Lju99C10T11 Lonicera japonica HOM05D002403 ORTHO05D002724 2.2e-35 153.3 109 74.3
Migut.B00855 Erythranthe guttata HOM05D002403 ORTHO05D002724 3.2e-34 149.4 109 71.6
COL.COLO4_14790 Corchorus olitorius HOM05D002403 ORTHO05D002724 1.2e-33 147.5 114 71.9
Manes.08G080200 Manihot esculenta HOM05D002403 ORTHO05D002724 1.2e-33 147.5 114 71.1
Actinidia01670 Actinidia chinensis HOM05D002403 ORTHO05D002724 2.1e-33 146.7 114 69.3
PGR031G0862 Punica granatum HOM05D002403 ORTHO05D002724 2.1e-33 146.7 113 69.0
Nitab4.5_0003044g0090 Nicotiana tabacum HOM05D002403 ORTHO05D002724 2.7e-33 146.4 114 69.3
TWI53G0157 Tripterygium wilfordii HOM05D002403 ORTHO05D002724 2.7e-33 146.4 114 71.1
vmacro19773 Vaccinium macrocarpon HOM05D002403 ORTHO05D002724 2.7e-33 146.4 113 67.3
Atru.chr8.1982 Acer truncatum HOM05D002403 ORTHO05D002724 3.5e-33 146.0 114 70.2
CSS0018724 Camellia sinensis var. sinensis HOM05D002403 ORTHO05D002724 3.5e-33 146.0 114 70.2
CSS0029925 Camellia sinensis var. sinensis HOM05D002403 ORTHO05D002724 3.5e-33 146.0 114 70.2
Glyma.10G145200 Glycine max HOM05D002403 ORTHO05D002724 4.6e-33 145.6 114 70.2
Gohir.A11G327000 Gossypium hirsutum HOM05D002403 ORTHO05D002724 6.0e-33 145.2 114 71.1
Gohir.D11G345900 Gossypium hirsutum HOM05D002403 ORTHO05D002724 6.0e-33 145.2 114 71.1
Gorai.007G376200 Gossypium raimondii HOM05D002403 ORTHO05D002724 6.0e-33 145.2 114 71.1
Nitab4.5_0011298g0010 Nicotiana tabacum HOM05D002403 ORTHO05D002724 7.8e-33 144.8 114 68.4
Hma1.2p1_1553F.1_g290230 Hydrangea macrophylla HOM05D002403 ORTHO05D002724 1.0e-32 144.4 114 69.3
VMungo0720G0820 Vigna mungo HOM05D002403 ORTHO05D002724 1.0e-32 144.4 114 70.2
CANSAT54G0224 Cannabis sativa HOM05D002403 ORTHO05D002724 1.3e-32 144.1 108 69.4
CAN.G1076.47 Capsicum annuum HOM05D002403 ORTHO05D002724 1.3e-32 144.1 114 67.5
Duzib093G2011 Durio zibethinus HOM05D002403 ORTHO05D002724 1.3e-32 144.1 113 68.1
Thecc.05G038800 Theobroma cacao HOM05D002403 ORTHO05D002724 1.3e-32 144.1 114 70.2
Lalb_Chr06g0167391 Lupinus albus HOM05D002403 ORTHO05D002724 2.3e-32 143.3 102 70.6
Phvul.007G203500 Phaseolus vulgaris HOM05D002403 ORTHO05D002724 2.3e-32 143.3 114 70.2
QL03p017774 Quercus lobata HOM05D002403 ORTHO05D002724 2.3e-32 143.3 114 68.4
MSTRG.27921 Avicennia marina HOM05D002403 ORTHO05D002724 3.9e-32 142.5 114 68.4
ClCG01G010800 Citrullus lanatus HOM05D002403 ORTHO05D002724 3.9e-32 142.5 115 68.7
Ciclev10012095m.g Citrus clementina HOM05D002403 ORTHO05D002724 3.9e-32 142.5 113 67.3
Nn3g21835 Nelumbo nucifera HOM05D002403 ORTHO05D002724 3.9e-32 142.5 115 67.8
Sed0015312 Sechium edule HOM05D002403 ORTHO05D002724 3.9e-32 142.5 114 68.4
arahy.Tifrunner.gnm1.ann1.THA6J1 Arachis hypogaea HOM05D002403 ORTHO05D002724 5.1e-32 142.1 114 68.4
arahy.Tifrunner.gnm1.ann1.B4GIY0 Arachis hypogaea HOM05D002403 ORTHO05D002724 6.6e-32 141.7 114 67.5
Lj5g0016202 Lotus japonicus HOM05D002403 ORTHO05D002724 6.6e-32 141.7 114 65.8
SalBow3G1703 Salvia bowleyana HOM05D002403 ORTHO05D002724 6.6e-32 141.7 102 71.6
MELO3C025524.2 Cucumis melo HOM05D002403 ORTHO05D002724 8.7e-32 141.4 115 68.7
FAN14G3133 Fragaria x ananassa HOM05D002403 ORTHO05D002724 8.7e-32 141.4 102 71.6
GSVIVG01031286001 Vitis vinifera HOM05D002403 ORTHO05D002724 8.7e-32 141.4 114 68.4
CsaV3_1G015760 Cucumis sativus L. HOM05D002403 ORTHO05D002724 1.1e-31 141.0 115 68.7
Oeu053744.1 Olea europaea HOM05D002403 ORTHO05D002724 1.1e-31 141.0 114 66.7
TWI77G1018 Tripterygium wilfordii HOM05D002403 ORTHO05D002724 1.1e-31 141.0 114 66.7
Migut.N00957 Erythranthe guttata HOM05D002403 ORTHO05D002724 1.5e-31 140.6 102 69.6
Potri.003G155800 Populus trichocarpa HOM05D002403 ORTHO05D002724 1.5e-31 140.6 113 65.5
Cc02_g35400 Coffea canephora HOM05D002403 ORTHO05D002724 1.9e-31 140.2 114 66.7
FvH4_6g08040 Fragaria vesca HOM05D002403 ORTHO05D002724 1.9e-31 140.2 102 70.6
Rhsim05G0130100 Rhododendron simsii HOM05D002403 ORTHO05D002724 1.9e-31 140.2 113 64.6
Sabra06G0065600 Salix brachista HOM05D002403 ORTHO05D002724 1.9e-31 140.2 114 68.4
DCAR_001898 Daucus carota HOM05D002403 ORTHO05D002724 2.5e-31 139.8 109 67.9
Prupe.6G308800 Prunus persica HOM05D002403 ORTHO05D002724 2.5e-31 139.8 106 66.0
unitig_32.g11535 Utricularia gibba HOM05D002403 ORTHO05D002724 2.5e-31 139.8 101 72.3
Cpa.g.sc260.7 Carica papaya HOM05D002403 ORTHO05D002724 3.3e-31 139.4 109 66.1
FAN05G4162 Fragaria x ananassa HOM05D002403 ORTHO05D002724 3.3e-31 139.4 102 70.6
Potri.006G086000 Populus trichocarpa HOM05D002403 ORTHO05D002724 3.3e-31 139.4 113 64.6
PGSC0003DMG400002789 Solanum tuberosum HOM05D002403 ORTHO05D002724 3.3e-31 139.4 114 64.9
Peaxi162Scf00357g00622 Petunia axillaris HOM05D002403 ORTHO05D002724 4.3e-31 139.0 114 64.9
ECA246G1410 Erigeron canadensis HOM05D002403 ORTHO05D002724 5.6e-31 138.7 109 67.0
FAN02G2552 Fragaria x ananassa HOM05D002403 ORTHO05D002724 7.3e-31 138.3 102 70.6
Psat6g153720 Pisum sativum HOM05D002403 ORTHO05D002724 7.3e-31 138.3 114 63.2
RhsimUnG0037800 Rhododendron simsii HOM05D002403 ORTHO05D002724 7.3e-31 138.3 113 62.8
MBI19_g32694_MAGBIO Magnolia biondii HOM05D002403 ORTHO05D002724 9.6e-31 137.9 115 67.8
Cfa006730 Carpinus fangiana HOM05D002403 ORTHO05D002724 1.3e-30 137.5 113 65.5
Os03g0316900 Oryza sativa ssp. japonica HOM05D002403 ORTHO05D002724 1.6e-30 137.1 110 63.6
RcHm_v2.0_Chr3g0457711 Rosa chinensis HOM05D002403 ORTHO05D002724 1.6e-30 137.1 102 69.6
TPR.G2594 Trifolium pratense HOM05D002403 ORTHO05D002724 1.6e-30 137.1 114 63.2
Solyc01g100850.3 Solanum lycopersicum HOM05D002403 ORTHO05D002724 2.1e-30 136.7 114 63.2
Sopen01g044350 Solanum pennellii HOM05D002403 ORTHO05D002724 2.1e-30 136.7 114 63.2
Carub.0006s0111 Capsella rubella HOM05D002403 ORTHO05D002724 2.8e-30 136.3 110 67.3
Thhalv10014095m.g Eutrema salsugineum HOM05D002403 ORTHO05D002724 2.8e-30 136.3 110 67.3
Aa31LG1G22480 Aethionema arabicum HOM05D002403 ORTHO05D002724 3.6e-30 136.0 110 67.3
ATR0693G037 Amborella trichopoda HOM05D002403 ORTHO05D002724 3.6e-30 136.0 115 67.8
A10p33350 Brassica napus HOM05D002403 ORTHO05D002724 3.6e-30 136.0 110 67.3
C09p74260 Brassica napus HOM05D002403 ORTHO05D002724 3.6e-30 136.0 110 67.3
BraA10t45366Z Brassica rapa HOM05D002403 ORTHO05D002724 3.6e-30 136.0 110 67.3
Haze_04030 Corylus avellana HOM05D002403 ORTHO05D002724 3.6e-30 136.0 113 65.5
PSO729G0056 Papaver somniferum HOM05D002403 ORTHO05D002724 3.6e-30 136.0 113 67.3
Aqoxy5G02737 Aquilegia oxysepala HOM05D002403 ORTHO05D002724 4.8e-30 135.6 114 67.5
AT5G02270 Arabidopsis thaliana HOM05D002403 ORTHO05D002724 4.8e-30 135.6 110 68.2
HanXRQChr17g0550561 Helianthus annuus HOM05D002403 ORTHO05D002724 4.8e-30 135.6 109 66.1
MD12G1203100 Malus domestica HOM05D002403 ORTHO05D002724 4.8e-30 135.6 105 65.7
Ah.06g196250 Amaranthus hybridus HOM05D002403 ORTHO05D002724 6.2e-30 135.2 113 65.5
BolC9t60159H Brassica oleracea HOM05D002403 ORTHO05D002724 6.2e-30 135.2 110 69.1
Hund21853 Selenicereus undatus HOM05D002403 ORTHO05D002724 8.1e-30 134.8 114 64.9
THA.LOC104827018 Tarenaya hassleriana HOM05D002403 ORTHO05D002724 8.1e-30 134.8 115 63.5
EL10Ac4g09511 Beta vulgaris HOM05D002403 ORTHO05D002724 1.1e-29 134.4 114 64.9
Lsat_1_v5_gn_3_61220 Lactuca sativa HOM05D002403 ORTHO05D002724 1.1e-29 134.4 99 68.7
Zm00001eb395610 Zea mays HOM05D002403 ORTHO05D002724 1.4e-29 134.0 115 62.6
Medtr1g084720 Medicago truncatula HOM05D002403 ORTHO05D002724 2.4e-29 133.3 114 62.3
Rhsim01G0130300 Rhododendron simsii HOM05D002403 ORTHO05D002724 2.4e-29 133.3 115 64.3
PSO724G0808 Papaver somniferum HOM05D002403 ORTHO05D002724 4.0e-29 132.5 113 65.5
Ca_10188_v3 Cicer arietinum L. HOM05D000897 ORTHO05D000716 5.3e-29 132.1 114 61.4
Sp6g40180 Schrenkiella parvula HOM05D002403 ORTHO05D002724 5.3e-29 132.1 110 65.5
BraA03t09450Z Brassica rapa HOM05D002403 ORTHO05D002724 9.0e-29 131.3 110 64.5
AL6G11530 Arabidopsis lyrata HOM05D002403 ORTHO05D002724 1.5e-28 130.6 110 66.4
CARHR211100 Cardamine hirsuta HOM05D002403 ORTHO05D002724 2.6e-28 129.8 110 66.4
CDE02G1988 Ceratophyllum demersum HOM05D002403 ORTHO05D002724 3.4e-28 129.4 115 63.5
Eucgr.H01294 Eucalyptus grandis HOM05D002403 ORTHO05D002724 1.3e-27 127.5 113 60.2
CiPaw.08G153200 Carya illinoinensis HOM05D002403 ORTHO05D002724 8.4e-27 124.8 113 59.3
Duzib106G1472 Durio zibethinus HOM05D002403 ORTHO05D002724 2.4e-26 123.2 114 61.4
BcaB01g06220 Brassica carinata HOM05D002403 ORTHO05D002724 3.5e-25 119.4 102 63.7
FAN09G3356 Fragaria x ananassa HOM05D002403 ORTHO05D002724 7.9e-25 118.2 102 63.7
HPP92_012778 Vanilla planifolia HOM05D002403 ORTHO05D002724 6.7e-24 115.2 99 62.6
HanXRQChr10g0302411 Helianthus annuus HOM05D002403 ORTHO05D002724 2.8e-22 109.8 96 62.5
SGA_v2.0_scaffold51G18784 Striga asiatica HOM05D001544 ORTHO05D002732 1.4e-21 107.5 61 95.1
Pp3c27_7710 Physcomitrium patens HOM05D002403 ORTHO05D002724 6.9e-21 105.1 113 52.2
Mapoly0016s0142 Marchantia polymorpha HOM05D002403 ORTHO05D002724 1.2e-20 104.4 116 49.1
A03p00600 Brassica napus HOM05D002403 ORTHO05D002724 2.2e-19 100.1 98 61.2
SMO118G0322 Selaginella moellendorffii HOM05D002403 ORTHO05D002724 3.8e-19 99.4 112 50.9
CBR_g28535 Chara braunii HOM05D002403 ORTHO05D002724 1.2e-17 94.4 95 52.6
BcaB01g06155 Brassica carinata HOM05D002403 ORTHO05D002724 2.7e-17 93.2 98 61.2
CiPaw.07G032700 Carya illinoinensis HOM05D002403 ORTHO05D002724 1.1e-15 87.8 59 76.3
BcaNung07063 Brassica carinata HOM05D002403 ORTHO05D002724 1.9e-15 87.0 94 59.6
Glyma.20G094300 Glycine max HOM05D002403 ORTHO05D002724 1.9e-15 87.0 79 64.6
SEGI_31808 Sequoiadendron giganteum HOM05D002403 ORTHO05D002724 1.9e-15 87.0 100 49.0
CDE08G0549 Ceratophyllum demersum HOM05D002403 ORTHO05D002724 2.4e-13 80.1 83 61.4
CDE08G1594 Ceratophyllum demersum HOM05D002403 ORTHO05D002724 2.4e-13 80.1 44 79.5
Actinidia01493 Actinidia chinensis HOM05D002403 ORTHO05D002724 3.1e-13 79.7 83 54.2
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 4.5e-12 75.9 96 47.9
MD04G1190300 Malus domestica HOM05D002403 ORTHO05D246850 4.9e-11 72.4 43 79.1
Hma1.2p1_0726F.1_g208950 Hydrangea macrophylla HOM05D002403 ORTHO05D002724 1.1e-10 71.2 82 48.8
PRCOL_00003673 Prasinoderma coloniale HOM05D002403 ORTHO05D002724 2.7e-09 66.6 101 40.6
TAR362G0833 Trochodendron aralioides HOM05D002403 ORTHO05D002724 2.7e-09 66.6 35 85.7
AUR62000435 Chenopodium quinoa HOM05D002403 ORTHO05D002724 1.3e-08 64.3 38 73.7
AUR62006780 Chenopodium quinoa HOM05D002403 ORTHO05D002724 1.8e-08 63.9 35 77.1
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 3.9e-08 62.8 35 74.3
BcaC02g12026 Brassica carinata HOM05D002403 ORTHO05D002724 1.6e-06 57.4 102 42.2
MD04G1190700 Malus domestica HOM05D002403 ORTHO05D002724 1.6e-06 57.4 39 71.8


User provided reference genes

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