Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.8e-248 862.1 428 100.0
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 3.1e-147 525.8 443 63.9
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 3.2e-144 515.8 458 61.8
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 7.5e-133 478.0 450 58.9
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 2.3e-126 456.4 452 59.7
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 4.1e-123 445.7 490 54.5
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 4.0e-118 429.1 458 54.8
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 5.4e-115 418.7 492 51.0
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 9.2e-115 417.9 476 52.5
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.3e-113 414.1 492 50.4
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 3.0e-113 412.9 487 50.7
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 3.6e-111 406.0 494 51.0
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.1e-110 404.4 482 51.7
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.8e-110 403.7 488 50.0
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 4.0e-110 402.5 489 49.7
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.2e-109 401.0 447 53.7
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 5.8e-109 398.7 488 49.4
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.1e-107 394.4 469 50.5
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.4e-107 394.0 448 53.3
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 4.1e-107 392.5 488 48.6
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.6e-106 390.6 465 50.3
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 2.7e-106 389.8 487 48.9
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 3.5e-106 389.4 460 51.3
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 4.6e-106 389.0 494 47.8
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 7.8e-106 388.3 487 50.1
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.1e-104 384.4 487 48.5
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 9.5e-104 381.3 453 50.8
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 9.5e-104 381.3 427 52.2
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 1.6e-103 380.6 483 48.2
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 4.7e-103 379.0 448 50.9
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.1e-102 377.9 456 48.9
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.9e-102 374.8 487 48.5
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.2e-101 374.4 475 47.8
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.2e-101 374.4 471 49.0
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 2.6e-101 373.2 497 49.9
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.4e-101 372.5 475 47.6
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.3e-100 370.9 444 49.3
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.9e-100 369.8 477 49.3
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 3.8e-100 369.4 477 50.7
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 8.4e-100 368.2 445 49.2
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.1e-99 367.9 442 50.0
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 4.6e-98 362.5 460 49.6
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 4.3e-96 355.9 455 49.2
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.3e-96 355.9 461 49.5
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.3e-96 355.9 460 48.9
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.3e-96 355.9 455 49.2
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.3e-96 355.9 455 49.2
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 9.6e-96 354.8 455 51.6
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.1e-95 353.6 455 49.0
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.2e-93 347.8 455 47.3
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.5e-93 347.4 426 49.1
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 2.0e-93 347.1 444 47.1
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.6e-93 346.7 469 48.6
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.6e-93 346.7 440 48.2
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 3.4e-93 346.3 419 49.6
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 4.4e-93 345.9 432 48.4
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 4.4e-93 345.9 437 48.3
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.4e-91 340.9 389 51.4
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 7.1e-91 338.6 388 50.8
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 9.3e-91 338.2 430 48.4
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.2e-90 337.8 432 48.1
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 2.7e-90 336.7 403 48.4
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 4.6e-90 335.9 464 46.3
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 7.8e-90 335.1 488 46.7
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.3e-89 334.3 458 46.9
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 8.7e-89 331.6 467 45.2
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 9.6e-88 328.2 474 45.8
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.6e-87 327.4 479 45.9
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.6e-87 326.2 362 52.8
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.4e-86 323.6 409 49.1
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.1e-86 323.2 386 50.5
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 3.1e-86 323.2 390 49.5
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 4.0e-86 322.8 447 47.0
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.5e-85 320.9 346 52.3
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 2.6e-85 320.1 499 43.7
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 4.5e-85 319.3 457 45.3
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 4.5e-85 319.3 467 45.0
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.8e-84 316.2 367 52.3
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.2e-83 313.2 380 50.5
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 3.2e-83 313.2 432 46.8
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 5.4e-83 312.4 375 50.1
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 2.1e-82 310.5 449 45.0
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.0e-81 308.1 460 44.8
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.3e-81 307.0 378 48.1
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.1e-79 300.4 442 45.5
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 2.8e-79 300.1 349 52.7
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 3.1e-78 296.6 471 42.9
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 7.6e-77 292.0 592 39.0
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 1.7e-76 290.8 432 45.1
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.1e-75 288.1 415 46.5
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.1e-75 288.1 380 48.4
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 2.5e-75 287.0 343 50.7
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 3.2e-75 286.6 360 50.3
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.3e-73 281.2 399 45.6
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.3e-73 281.2 294 54.4
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 8.7e-73 278.5 355 49.6
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 6.2e-71 272.3 468 41.2
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 3.1e-70 270.0 357 49.6
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 5.3e-70 269.2 382 46.1
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 2.6e-69 266.9 368 47.8
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 5.8e-69 265.8 300 53.0
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.7e-68 264.2 358 48.6
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 1.7e-68 264.2 363 47.1
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 2.2e-68 263.8 344 48.5
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 2.9e-68 263.5 363 48.2
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 3.2e-67 260.0 354 48.3
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 6.1e-66 255.8 350 46.6
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 6.1e-66 255.8 350 46.6
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 3.1e-62 243.4 365 43.8
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 3.1e-62 243.4 473 38.5
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.5e-61 241.1 353 43.9
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 3.4e-61 240.0 430 39.1
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.6e-58 231.1 344 43.3
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 1.5e-56 224.6 233 49.8
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.2e-55 220.7 370 42.7
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.4e-53 213.4 281 46.6
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 2.9e-52 210.3 358 43.3
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.8e-52 209.9 375 41.3
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 2.7e-50 203.8 184 56.0
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 6.1e-50 202.6 348 41.4
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 2.3e-49 200.7 289 44.3
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 8.8e-49 198.7 256 45.7
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.6e-42 177.9 353 38.8
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 1.4e-38 164.9 108 72.2
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.0e-36 158.7 347 37.5
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.0e-33 148.7 131 51.9
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.7e-32 142.9 267 34.1
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.9e-29 132.9 255 33.7
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 6.5e-28 129.4 219 37.9
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 7.2e-27 125.9 370 31.4
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.7e-26 123.2 281 29.2
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.8e-25 121.3 84 70.2
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.4e-24 117.1 323 31.9
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 3.7e-23 113.6 91 52.7
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 6.1e-18 96.3 290 31.0
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.3e-17 94.4 68 69.1
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 5.0e-12 76.6 174 32.8
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.2e-08 65.5 47 61.7


User provided reference genes

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