Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 2.4e-67 258.8 145 100.0
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.6e-42 176.4 140 69.3
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 6.6e-41 171.0 141 63.8
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 1.5e-40 169.9 141 63.1
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.1e-39 166.0 145 63.4
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 4.8e-39 164.9 145 60.7
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 4.8e-39 164.9 145 60.7
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 8.1e-39 164.1 129 70.5
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 8.1e-39 164.1 140 62.9
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 2.4e-38 162.5 140 63.6
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 9.0e-38 160.6 140 63.6
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 9.0e-38 160.6 140 63.6
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 9.0e-38 160.6 140 62.1
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 1.2e-37 160.2 140 60.7
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.5e-37 159.8 136 61.8
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 1.5e-37 159.8 140 62.1
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 1.5e-37 159.8 140 62.1
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 1.5e-37 159.8 136 60.3
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 2.0e-37 159.5 140 61.4
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 2.6e-37 159.1 140 60.7
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 5.8e-37 157.9 144 60.4
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 7.6e-37 157.5 142 62.0
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.3e-36 156.8 141 60.3
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 1.7e-36 156.4 146 59.6
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 2.9e-36 155.6 139 59.7
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.9e-36 155.6 144 59.7
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 2.9e-36 155.6 141 61.7
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 2.9e-36 155.6 140 60.7
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 4.9e-36 154.8 147 60.5
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 6.4e-36 154.5 140 60.7
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.1e-35 153.7 140 60.0
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.9e-35 152.9 143 59.4
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.9e-35 152.9 139 63.3
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.4e-35 152.5 144 58.3
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 4.2e-35 151.8 144 57.6
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 4.2e-35 151.8 144 54.2
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 4.2e-35 151.8 144 57.6
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 4.2e-35 151.8 139 59.7
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 5.4e-35 151.4 144 57.6
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 7.1e-35 151.0 146 59.6
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 9.3e-35 150.6 144 58.3
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 2.1e-34 149.4 142 57.7
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.1e-34 149.4 142 57.7
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 3.5e-34 148.7 137 60.6
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.6e-34 148.3 143 57.3
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 7.9e-34 147.5 119 67.2
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 7.9e-34 147.5 142 57.0
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.0e-33 147.1 129 59.7
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.3e-33 146.7 142 57.0
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.8e-33 146.4 147 56.5
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.3e-33 146.0 139 58.3
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 2.3e-33 146.0 137 58.4
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 3.0e-33 145.6 120 67.5
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 3.9e-33 145.2 144 59.0
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 3.9e-33 145.2 144 58.3
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 5.1e-33 144.8 147 55.8
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 8.7e-33 144.1 142 59.2
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 8.7e-33 144.1 137 59.1
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.9e-32 142.9 144 59.0
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.5e-32 142.5 139 54.0
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 5.6e-32 141.4 142 54.9
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 7.4e-32 141.0 143 55.2
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 9.6e-32 140.6 124 60.5
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.3e-31 140.2 144 54.9
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.6e-31 139.8 144 53.5
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.1e-31 139.4 121 63.6
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.1e-31 139.4 144 56.2
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 2.1e-31 139.4 144 52.1
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.8e-31 138.3 121 62.8
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.4e-30 136.7 139 58.3
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.4e-30 136.7 147 55.8
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.4e-30 136.7 162 53.1
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.8e-30 136.3 139 52.5
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 3.1e-30 135.6 140 55.0
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 9.0e-30 134.0 137 60.6
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 9.0e-30 134.0 142 56.3
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.5e-29 133.3 129 55.8
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 1.5e-29 133.3 124 58.9
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.0e-29 132.9 117 64.1
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 2.6e-29 132.5 141 55.3
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 5.8e-29 131.3 121 57.9
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 5.8e-29 131.3 145 52.4
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 7.6e-29 131.0 144 52.8
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 7.6e-29 131.0 124 57.3
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 9.9e-29 130.6 143 51.7
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.2e-28 129.4 140 50.7
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 2.9e-28 129.0 145 51.0
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 4.9e-28 128.3 124 58.9
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.1e-27 127.1 128 53.9
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 2.4e-27 125.9 122 59.8
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.4e-27 125.9 120 59.2
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 3.2e-27 125.6 130 54.6
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 3.2e-27 125.6 120 59.2
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 4.2e-27 125.2 123 55.3
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 5.5e-27 124.8 127 52.8
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 7.1e-27 124.4 122 55.7
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 7.1e-27 124.4 143 51.7
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 9.3e-27 124.0 120 57.5
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.2e-26 123.6 135 46.7
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 1.2e-26 123.6 120 56.7
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.7e-26 122.5 127 49.6
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 3.5e-26 122.1 144 50.0
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 3.5e-26 122.1 146 47.3
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 6.0e-26 121.3 130 50.8
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 1.8e-25 119.8 141 51.1
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 5.1e-25 118.2 142 50.0
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 5.6e-24 114.8 142 50.0
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 9.6e-24 114.0 144 47.9
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.3e-23 113.6 129 51.9
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.1e-22 110.5 141 48.2
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.4e-22 109.4 91 63.7
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 4.0e-22 108.6 142 45.1
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.2e-21 107.1 143 46.9
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.5e-21 106.7 124 50.8
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 2.0e-21 106.3 141 44.7
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.3e-20 103.6 138 48.6
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 3.8e-20 102.1 107 53.3
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-19 99.8 133 49.6
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-19 99.8 133 49.6
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 7.9e-18 94.4 102 54.9
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.3e-16 89.0 83 55.4
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 2.8e-15 85.9 96 51.0
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 4.2e-11 72.0 141 38.3
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.5e-11 71.6 147 34.0
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 3.6e-10 68.9 138 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 1.8e-09 66.6 148 29.7
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 6.3e-07 58.2 80 43.8
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.1e-06 57.4 120 34.2


User provided reference genes

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