Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 2079.7 1059 100.0
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1648.3 1059 79.4
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1588.9 1061 76.3
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1558.1 1065 74.9
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1555.0 1065 74.8
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1549.6 1126 70.9
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1526.1 1063 73.1
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1523.5 1181 68.1
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1501.1 1065 71.0
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1496.5 1062 71.8
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1489.2 1071 71.1
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1482.6 1069 71.0
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1479.2 1071 71.0
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1478.0 1063 70.7
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1474.9 1134 67.9
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1473.0 1072 70.6
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1468.8 1068 69.6
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1460.7 1096 68.5
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1458.0 1066 69.7
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1457.6 1051 71.2
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1456.0 1063 69.8
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1454.9 1071 69.0
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1453.7 1060 70.0
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1449.9 1069 69.4
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1449.1 1069 69.1
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1447.6 1071 68.6
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1446.8 1071 68.5
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1446.0 1070 69.4
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1443.3 1074 69.3
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1442.6 1069 68.9
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1440.2 1070 69.2
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1439.1 1069 68.3
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1439.1 1071 69.0
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1438.3 1069 69.2
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1438.3 1068 69.1
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1437.9 1070 69.2
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1437.6 1071 69.3
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1436.4 1067 68.7
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1434.5 1069 68.7
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1427.2 1070 67.9
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1426.4 1066 68.1
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1425.2 1100 66.7
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1424.8 1070 67.9
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1424.5 1070 67.9
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1424.1 1070 67.9
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1419.4 1064 67.4
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1418.3 1070 67.8
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1416.7 1066 68.2
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1413.3 1048 69.6
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1413.3 1076 68.1
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1412.5 971 74.6
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1411.0 1070 67.4
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1408.7 1070 67.1
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1407.9 1066 67.2
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1407.5 1070 66.9
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1404.0 1070 66.5
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1402.9 1064 66.8
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1401.3 1074 67.8
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1401.3 1074 67.9
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1401.0 1071 66.9
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1401.0 1071 66.9
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1397.9 1071 66.6
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1397.1 1069 67.0
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1396.3 1070 67.9
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1394.0 1071 66.4
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1392.1 1066 68.0
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1388.2 1070 66.4
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1385.5 1064 66.1
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1381.7 1068 66.5
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1373.2 1065 66.2
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1366.7 1071 64.8
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1364.0 1069 64.8
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1362.1 1064 65.8
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1360.9 1071 65.2
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1360.1 1071 64.8
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1335.5 1070 64.5
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1334.7 1081 64.3
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1328.2 1071 64.9
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1321.2 1062 64.2
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1320.1 1069 63.8
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1319.7 1083 62.9
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1312.7 971 68.3
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1304.3 1086 64.4
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1288.1 1065 63.8
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1285.0 1151 60.8
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1265.4 1067 62.9
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1242.3 932 66.6
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1237.2 973 64.6
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1230.7 1074 58.4
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1224.9 1070 60.7
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1201.4 1059 60.3
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1199.5 1075 58.8
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1168.3 875 67.0
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1129.4 1074 55.7
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 0.0e+00 1076.6 857 66.3
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 5.1e-308 1061.2 1023 54.7
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 3.0e-300 1035.4 903 60.9
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 3.6e-293 1011.9 941 54.0
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 6.3e-290 1001.1 761 67.3
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 2.2e-279 966.1 739 67.3
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 5.5e-270 934.9 1079 46.2
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 5.4e-265 918.3 670 69.1
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 2.1e-261 906.4 1072 45.8
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 2.8e-261 906.0 670 67.5
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 2.8e-261 906.0 1073 45.9
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.2e-235 820.8 1049 42.7
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 6.2e-229 798.5 1089 41.2
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 8.1e-229 798.1 674 61.3
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 7.6e-227 791.6 596 68.3
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.3e-215 754.2 504 75.6
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 5.6e-214 748.8 567 68.1
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 6.4e-210 735.3 566 66.3
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.0e-207 728.0 566 66.3
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.8e-205 719.9 1072 39.6
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 5.2e-175 619.4 1072 38.4
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 2.6e-171 607.1 469 67.8
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 2.3e-146 524.2 392 69.4
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 6.2e-128 463.0 562 46.3
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 1.3e-125 455.3 429 57.8
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 3.0e-122 444.1 308 72.4
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.2e-118 432.2 425 53.4
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 1.5e-118 431.8 1096 29.5
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 9.2e-116 422.5 386 56.7
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 7.8e-115 419.5 463 54.4
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 3.4e-102 377.5 385 54.3
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 1.9e-100 371.7 1191 26.9
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 5.6e-97 360.1 343 56.6
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 1.6e-96 358.6 280 67.1
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.8e-82 312.0 319 50.8
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 1.4e-76 292.4 239 64.4
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 1.5e-70 272.3 212 62.3
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 9.4e-68 263.1 224 66.1
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-67 260.8 310 42.9
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 5.5e-60 237.3 135 85.9
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 3.4e-49 201.4 196 53.1
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 4.0e-42 177.9 145 65.5
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 2.2e-40 172.2 148 61.5
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 4.8e-40 171.0 131 71.8
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 8.9e-34 150.2 178 47.2
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 4.9e-32 144.4 183 41.5
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 1.6e-30 139.4 92 71.7
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.2e-27 129.8 88 68.2
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 4.7e-27 127.9 91 67.0
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 8.3e-24 117.1 76 71.1
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 5.4e-23 114.4 98 63.3
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 6.0e-22 110.9 133 52.6
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 1.9e-20 105.9 69 76.8
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 9.5e-20 103.6 97 57.7
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 8.1e-19 100.5 72 68.1
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 2.3e-18 99.0 123 45.5
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 5.2e-18 97.8 121 46.3
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 7.8e-14 84.0 58 72.4
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-13 82.0 98 43.9
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.5e-12 79.7 56 66.1
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 5.6e-12 77.8 57 64.9
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 1.4e-10 73.2 48 72.9
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 5.2e-10 71.2 47 72.3
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 7.6e-09 67.4 144 34.0
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 2.9e-08 65.5 144 33.3
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 2.4e-07 62.4 144 34.0
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 3.2e-07 62.0 600 22.2
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 4.1e-07 61.6 144 31.9
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 4.1e-07 61.6 181 29.3
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 9.2e-07 60.5 132 31.8
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 2.1e-06 59.3 145 29.7
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 2.1e-06 59.3 148 30.4
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 2.7e-06 58.9 148 29.7
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 3.5e-06 58.5 144 33.3
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 3.5e-06 58.5 144 33.3
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 3.5e-06 58.5 144 33.3
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 3.5e-06 58.5 159 29.6
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 3.5e-06 58.5 159 29.6
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 4.6e-06 58.2 148 29.1
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 6.0e-06 57.8 174 27.0
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 6.0e-06 57.8 148 30.4
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 7.8e-06 57.4 154 28.6
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 7.8e-06 57.4 116 32.8


User provided reference genes

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