Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.3e-125 452.2 220 100.0
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.5e-105 386.3 243 82.3
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 2.9e-104 382.1 240 82.5
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 3.9e-85 318.5 217 76.0
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.0e-69 267.3 212 62.7
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 5.1e-69 265.0 217 63.6
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.6e-67 260.0 197 65.0
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.2e-67 259.6 201 64.2
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 5.0e-64 248.4 213 59.2
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.4e-63 246.9 219 60.7
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 9.4e-63 244.2 219 57.1
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.8e-61 237.7 220 54.1
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.1e-60 237.3 212 56.6
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 7.4e-60 234.6 210 56.2
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 7.4e-60 234.6 212 59.9
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 7.4e-60 234.6 219 54.3
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 9.7e-60 234.2 214 54.7
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.7e-59 233.4 220 54.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.8e-59 232.6 219 56.2
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.7e-59 232.3 216 55.6
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 4.8e-59 231.9 210 53.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 4.8e-59 231.9 210 54.8
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.8e-59 231.9 217 55.8
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.8e-59 231.9 218 55.0
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.8e-59 231.9 212 55.7
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 6.3e-59 231.5 219 54.8
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 8.2e-59 231.1 220 56.4
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.1e-58 230.7 212 56.1
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.4e-58 230.3 213 54.9
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.4e-58 230.3 213 55.4
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.8e-58 229.9 212 52.8
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.8e-58 229.9 213 55.4
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.1e-58 229.2 213 54.0
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 4.1e-58 228.8 212 55.2
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.1e-58 228.8 210 55.2
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 9.1e-58 227.6 213 54.0
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 9.1e-58 227.6 219 53.4
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.5e-57 226.9 212 53.8
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.0e-57 226.5 213 54.9
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.4e-57 225.7 210 57.1
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 5.9e-57 224.9 209 55.0
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 5.9e-57 224.9 213 54.0
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.0e-56 224.2 213 53.1
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.7e-56 223.4 209 53.1
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.8e-56 222.2 209 54.1
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 6.5e-56 221.5 215 54.0
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 8.5e-56 221.1 219 52.1
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.5e-56 221.1 219 51.6
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.1e-55 220.7 213 52.1
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.1e-55 220.7 219 52.1
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.4e-55 220.3 209 53.6
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.4e-55 220.3 194 55.2
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.4e-55 220.3 212 52.8
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 2.5e-55 219.5 219 52.5
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.5e-55 219.5 219 53.0
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.2e-55 219.2 219 51.6
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.2e-55 219.2 219 51.6
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 3.2e-55 219.2 212 53.8
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 3.2e-55 219.2 216 52.8
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 4.2e-55 218.8 210 52.4
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.2e-55 218.8 209 53.6
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.5e-55 218.4 219 51.1
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 5.5e-55 218.4 208 53.4
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 7.2e-55 218.0 198 54.0
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 7.2e-55 218.0 213 53.1
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 9.4e-55 217.6 210 52.4
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.6e-54 216.9 213 51.6
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.1e-54 216.5 180 56.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 3.6e-54 215.7 212 53.8
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.6e-54 215.7 242 48.3
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 4.7e-54 215.3 213 54.0
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.0e-53 214.2 211 52.1
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.4e-53 213.8 219 50.7
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.4e-53 213.8 194 54.6
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.4e-53 213.8 211 54.0
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-53 213.4 209 53.1
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 2.3e-53 213.0 219 51.1
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.3e-53 213.0 209 53.1
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.0e-53 212.6 214 51.9
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 3.0e-53 212.6 219 50.2
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 3.9e-53 212.2 219 50.2
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.9e-53 212.2 209 53.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 3.9e-53 212.2 219 50.7
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 5.2e-53 211.8 216 50.0
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 5.2e-53 211.8 213 50.7
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 5.2e-53 211.8 213 50.7
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 5.2e-53 211.8 217 51.2
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.1e-52 210.7 214 50.9
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.6e-52 209.5 223 48.0
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.6e-52 209.5 212 50.5
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.3e-52 209.1 213 49.8
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 4.4e-52 208.8 214 53.3
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 9.7e-52 207.6 212 49.5
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.8e-51 206.1 180 54.4
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.8e-51 206.1 219 51.6
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.8e-51 206.1 212 49.5
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 3.7e-51 205.7 219 49.8
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 4.8e-51 205.3 213 51.2
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 6.3e-51 204.9 213 51.2
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 6.3e-51 204.9 213 51.2
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.4e-50 203.8 208 50.0
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-50 203.8 208 50.5
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-50 203.8 208 50.0
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.4e-50 203.8 208 50.0
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.4e-50 203.8 199 53.8
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.8e-50 203.4 223 46.6
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.8e-50 203.4 233 50.6
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.4e-50 203.0 217 49.8
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.4e-50 203.0 219 49.3
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 5.3e-50 201.8 198 50.0
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 7.0e-50 201.4 208 50.0
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 7.0e-50 201.4 214 51.4
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 9.1e-50 201.1 218 48.6
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.2e-49 200.7 213 50.2
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.6e-49 200.3 211 49.3
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 3.5e-49 199.1 210 48.6
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.5e-49 199.1 219 49.8
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 4.5e-49 198.7 179 53.6
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 5.9e-49 198.4 232 46.1
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.0e-48 197.6 211 48.8
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.0e-48 195.3 112 81.2
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.0e-48 195.3 112 81.2
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 8.5e-48 194.5 219 48.4
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.5e-47 193.7 213 48.8
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 2.5e-47 193.0 194 50.0
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.2e-47 192.2 216 48.1
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 7.2e-47 191.4 264 40.2
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.1e-46 189.9 175 54.9
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.4e-45 187.2 220 46.8
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.8e-45 186.8 213 45.5
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 6.7e-45 184.9 215 47.4
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.0e-44 183.3 230 47.4
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.4e-44 182.2 112 75.9
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.4e-44 182.2 213 45.1
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 5.7e-44 181.8 192 49.5
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 2.8e-43 179.5 191 47.6
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 3.7e-43 179.1 116 70.7
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.5e-41 172.6 112 70.5
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 7.7e-41 171.4 220 43.6
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.0e-40 171.0 184 48.4
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.6e-38 162.5 219 38.4
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 8.0e-38 161.4 204 41.2
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.9e-32 142.9 123 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.3e-29 133.3 265 34.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 5.0e-24 115.5 83 65.1
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 3.3e-23 112.8 71 71.8
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 5.2e-21 105.5 257 29.6
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 9.8e-20 101.3 72 61.1
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 6.6e-16 88.6 58 72.4
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 7.3e-15 85.1 169 35.5
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 6.0e-09 65.5 41 65.9
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 7.8e-09 65.1 41 65.9
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.0e-08 63.2 60 48.3
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.9e-08 62.8 39 74.4
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 1.1e-07 61.2 166 30.1
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.9e-07 60.5 53 56.6


User provided reference genes

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