Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26616 Striga asiatica HOM05D000607 ORTHO05D000518 2.7e-33 145.2 102 100.0
SGA_v2.0_scaffold60G21045 Striga asiatica HOM05D000607 ORTHO05D000518 9.2e-13 77.0 46 89.1
Migut.F00338 Erythranthe guttata HOM05D000607 ORTHO05D000518 1.0e-11 73.6 46 84.8
MSTRG.8735 Avicennia marina HOM05D000607 ORTHO05D000518 1.3e-11 73.2 46 82.6
SalBow4G0149 Salvia bowleyana HOM05D000607 ORTHO05D000518 1.3e-11 73.2 46 82.6
SalBow4G2098 Salvia bowleyana HOM05D000607 ORTHO05D000518 1.3e-11 73.2 46 82.6
unitig_52.g17745 Utricularia gibba HOM05D000607 ORTHO05D000518 1.7e-11 72.8 57 68.4
SGA_v2.0_scaffold44G16724 Striga asiatica HOM05D000607 ORTHO05D000518 3.0e-11 72.0 46 82.6
unitig_0.g2477 Utricularia gibba HOM05D000607 ORTHO05D000518 3.0e-11 72.0 57 66.7
Hma1.2p1_0270F.1_g108010 Hydrangea macrophylla HOM05D000607 ORTHO05D000518 3.9e-11 71.6 46 82.6
Actinidia34115 Actinidia chinensis HOM05D000607 ORTHO05D000518 5.0e-11 71.2 46 80.4
Medtr1g100587 Medicago truncatula HOM05D000607 ORTHO05D000518 5.0e-11 71.2 46 80.4
Oeu056258.1 Olea europaea HOM05D000607 ORTHO05D000518 5.0e-11 71.2 46 82.6
arahy.Tifrunner.gnm1.ann1.QHK7TD Arachis hypogaea HOM05D000607 ORTHO05D000518 6.6e-11 70.9 46 78.3
arahy.Tifrunner.gnm1.ann1.U9GE21 Arachis hypogaea HOM05D000607 ORTHO05D000518 6.6e-11 70.9 46 78.3
CSS0020590 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 6.6e-11 70.9 46 80.4
Actinidia31820 Actinidia chinensis HOM05D000607 ORTHO05D000518 8.6e-11 70.5 46 80.4
CiPaw.03G106600 Carya illinoinensis HOM05D000607 ORTHO05D000518 8.6e-11 70.5 46 78.3
Glyma.10G235700 Glycine max HOM05D000607 ORTHO05D000518 8.6e-11 70.5 46 80.4
MSTRG.91 Avicennia marina HOM05D000607 ORTHO05D000518 1.1e-10 70.1 46 80.4
A09p06780 Brassica napus HOM05D000607 ORTHO05D000518 1.1e-10 70.1 57 64.9
BraA09t36323Z Brassica rapa HOM05D000607 ORTHO05D000518 1.1e-10 70.1 57 64.9
Cpa.g.sc107.55 Carica papaya HOM05D000607 ORTHO05D000518 1.1e-10 70.1 46 80.4
Duzib205G0442 Durio zibethinus HOM05D000607 ORTHO05D000518 1.1e-10 70.1 46 80.4
Phvul.007G070001 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 1.1e-10 70.1 46 78.3
Thecc.03G177000 Theobroma cacao HOM05D000607 ORTHO05D000518 1.1e-10 70.1 46 78.3
A06p34650 Brassica napus HOM05D000607 ORTHO05D000518 1.5e-10 69.7 57 63.2
C07p43850 Brassica napus HOM05D000607 ORTHO05D000518 1.5e-10 69.7 57 63.2
BolC7t44913H Brassica oleracea HOM05D000607 ORTHO05D000518 1.5e-10 69.7 57 63.2
BraA06t26392Z Brassica rapa HOM05D000607 ORTHO05D000518 1.5e-10 69.7 57 63.2
Lj5g0019793 Lotus japonicus HOM05D000607 ORTHO05D000518 1.5e-10 69.7 46 80.4
arahy.Tifrunner.gnm1.ann1.N1W8DH Arachis hypogaea HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 76.1
arahy.Tifrunner.gnm1.ann1.S3TF80 Arachis hypogaea HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 76.1
C09p07520 Brassica napus HOM05D000607 ORTHO05D000518 1.9e-10 69.3 57 63.2
BolC9t53667H Brassica oleracea HOM05D000607 ORTHO05D000518 1.9e-10 69.3 57 63.2
CAN.G490.33 Capsicum annuum HOM05D000607 ORTHO05D000518 1.9e-10 69.3 47 85.1
ClCG09G012900 Citrullus lanatus HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 78.3
CsaV3_3G049960 Cucumis sativus L. HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 78.3
Gohir.A09G041900 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 78.3
Gohir.D09G042800 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 78.3
Gorai.006G049200 Gossypium raimondii HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 78.3
Manes.06G147500 Manihot esculenta HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 78.3
Hund04743 Selenicereus undatus HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 78.3
Sc19g0001500 Simmondsia chinensis HOM05D000607 ORTHO05D000518 1.9e-10 69.3 46 76.1
Sopen03g004610 Solanum pennellii HOM05D000607 ORTHO05D000518 1.9e-10 69.3 47 85.1
PGSC0003DMG400014342 Solanum tuberosum HOM05D000607 ORTHO05D000518 1.9e-10 69.3 47 85.1
Aa31LG11G3130 Aethionema arabicum HOM05D000607 ORTHO05D000518 2.5e-10 68.9 46 76.1
MELO3C003320.2 Cucumis melo HOM05D000607 ORTHO05D000518 2.5e-10 68.9 46 76.1
Duzib068G0051 Durio zibethinus HOM05D000607 ORTHO05D000518 2.5e-10 68.9 46 78.3
TPR.G14333 Trifolium pratense HOM05D000071 ORTHO05D000029 2.5e-10 68.9 46 78.3
vmacro06679 Vaccinium macrocarpon HOM05D000607 ORTHO05D000518 2.5e-10 68.9 46 78.3
Migut.F01118 Erythranthe guttata HOM05D000607 ORTHO05D000518 3.3e-10 68.6 46 73.9
Eucgr.A02786 Eucalyptus grandis HOM05D000607 ORTHO05D000518 3.3e-10 68.6 46 78.3
Nitab4.5_0001842g0020 Nicotiana tabacum HOM05D000607 ORTHO05D000518 3.3e-10 68.6 47 83.0
Nitab4.5_0002117g0010 Nicotiana tabacum HOM05D000607 ORTHO05D000518 3.3e-10 68.6 47 83.0
Nitab4.5_0003072g0030 Nicotiana tabacum HOM05D000607 ORTHO05D000518 3.3e-10 68.6 47 83.0
CANSAT21G1682 Cannabis sativa HOM05D000607 ORTHO05D000518 4.3e-10 68.2 46 78.3
CiPaw.04G071200 Carya illinoinensis HOM05D000607 ORTHO05D000518 4.3e-10 68.2 46 76.1
ECA232G0205 Erigeron canadensis HOM05D000607 ORTHO05D000518 4.3e-10 68.2 44 81.8
HanXRQChr09g0253611 Helianthus annuus HOM05D000607 ORTHO05D000518 4.3e-10 68.2 44 81.8
Lsat_1_v5_gn_9_55940 Lactuca sativa HOM05D000607 ORTHO05D000518 4.3e-10 68.2 44 81.8
Peaxi162Scf00444g00840 Petunia axillaris HOM05D000607 ORTHO05D000518 4.3e-10 68.2 47 83.0
QL09p014173 Quercus lobata HOM05D000607 ORTHO05D000518 4.3e-10 68.2 46 73.9
RcHm_v2.0_Chr1g0377351 Rosa chinensis HOM05D000607 ORTHO05D000518 4.3e-10 68.2 46 76.1
GSVIVG01028974001 Vitis vinifera HOM05D000607 ORTHO05D000518 4.3e-10 68.2 46 78.3
AUR62021189 Chenopodium quinoa HOM05D000262 ORTHO05D009380 5.6e-10 67.8 46 78.3
Dinv38957 Davidia involucrata HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 71.7
FvH4_7g29510 Fragaria vesca HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
FAN03G1315 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
FAN03G1886 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
FAN06G0737 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
FAN06G1071 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
FAN10G2857 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
FAN10G3783 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
Gohir.A12G257600 Gossypium hirsutum HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
Gohir.D12G258900 Gossypium hirsutum HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
Gorai.008G277300 Gossypium raimondii HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
Manes.14G026000 Manihot esculenta HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
VMungo0720G0520 Vigna mungo HOM05D000607 ORTHO05D000518 5.6e-10 67.8 46 76.1
Duzib084G1049 Durio zibethinus HOM05D000607 ORTHO05D000518 7.3e-10 67.4 46 76.1
Oeu024221.1 Olea europaea HOM05D000607 ORTHO05D000518 7.3e-10 67.4 46 78.3
Os10g0506100 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 7.3e-10 67.4 46 69.6
Psat6g198560 Pisum sativum HOM05D000607 ORTHO05D000518 7.3e-10 67.4 57 68.4
Prupe.2G294600 Prunus persica HOM05D000607 ORTHO05D000518 7.3e-10 67.4 46 76.1
HPP92_022561 Vanilla planifolia HOM05D000607 ORTHO05D000518 7.3e-10 67.4 46 69.6
Zm00001eb044060 Zea mays HOM05D000607 ORTHO05D000518 7.3e-10 67.4 46 69.6
AL6G35040 Arabidopsis lyrata HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
AT5G23760 Arabidopsis thaliana HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
CSS0049347 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 69.6
Carub.0006s2151 Capsella rubella HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
CARHR189770 Cardamine hirsuta HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
Ca_10768_v3 Cicer arietinum L. HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 78.3
Cc02_g02980 Coffea canephora HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
FAN01G2376 Fragaria x ananassa HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
Lalb_Chr21g0305041 Lupinus albus HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 78.3
Potri.012G141500 Populus trichocarpa HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
PGR042G2454 Punica granatum HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
Sabra12G0106400 Salix brachista HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
Sp2g23460 Schrenkiella parvula HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
Sed0010299 Sechium edule HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 76.1
THA.LOC104798928 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 9.5e-10 67.0 46 69.6
BcaB04g19847 Brassica carinata HOM05D000607 ORTHO05D000518 1.2e-09 66.6 46 73.9
CSS0007996 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 1.2e-09 66.6 46 76.1
CSS0011803 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 1.2e-09 66.6 46 76.1
Gohir.A12G227100 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.2e-09 66.6 46 73.9
Gohir.D12G229600 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.2e-09 66.6 46 73.9
Gorai.008G245900 Gossypium raimondii HOM05D000607 ORTHO05D000518 1.2e-09 66.6 46 73.9
Potri.015G144200 Populus trichocarpa HOM05D000607 ORTHO05D000518 1.2e-09 66.6 46 78.3
Atru.chr1.456 Acer truncatum HOM05D000607 ORTHO05D000518 1.6e-09 66.2 46 78.3
Dinv28439 Davidia involucrata HOM05D000607 ORTHO05D000518 1.6e-09 66.2 46 76.1
Lalb_Chr03g0034561 Lupinus albus HOM05D000607 ORTHO05D000518 1.6e-09 66.2 46 71.7
MD07G1270100 Malus domestica HOM05D000607 ORTHO05D000518 1.6e-09 66.2 46 73.9
TAR367G0009 Trochodendron aralioides HOM05D000607 ORTHO05D000518 1.6e-09 66.2 46 69.6
Zm00001eb404100 Zea mays HOM05D000607 ORTHO05D000518 1.6e-09 66.2 46 71.7
Eucgr.D01867 Eucalyptus grandis HOM05D000607 ORTHO05D000518 2.1e-09 65.9 46 76.1
MD07G1270400 Malus domestica HOM05D000607 ORTHO05D000518 2.1e-09 65.9 46 73.9
Nn1g01468 Nelumbo nucifera HOM05D000607 ORTHO05D000518 2.1e-09 65.9 46 69.6
Phvul.004G116400 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 2.1e-09 65.9 46 71.7
Solyc03g025800.3 Solanum lycopersicum HOM05D000607 ORTHO05D000518 2.1e-09 65.9 45 84.4
Thecc.03G276200 Theobroma cacao HOM05D000607 ORTHO05D000518 2.1e-09 65.9 46 71.7
Glyma.09G138600 Glycine max HOM05D000607 ORTHO05D000518 2.8e-09 65.5 46 71.7
MD01G1201200 Malus domestica HOM05D000607 ORTHO05D000518 2.8e-09 65.5 46 73.9
Glyma.16G189302 Glycine max HOM05D000607 ORTHO05D000518 3.6e-09 65.1 46 71.7
Lj2g0016591 Lotus japonicus HOM05D000607 ORTHO05D000518 3.6e-09 65.1 46 71.7
Lalb_Chr01g0009321 Lupinus albus HOM05D000607 ORTHO05D000518 3.6e-09 65.1 46 71.7
PSO478G3266 Papaver somniferum HOM05D000607 ORTHO05D000518 3.6e-09 65.1 44 72.7
PSO782G3265 Papaver somniferum HOM05D000607 ORTHO05D000518 3.6e-09 65.1 44 72.7
TWI14G0448 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 3.6e-09 65.1 46 76.1
VMungo0464G2180 Vigna mungo HOM05D000607 ORTHO05D000518 3.6e-09 65.1 46 69.6
MSTRG.8457 Avicennia marina HOM05D000607 ORTHO05D000518 4.7e-09 64.7 44 75.0
THA.LOC104818169 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 4.7e-09 64.7 46 71.7
Gohir.A12G227300 Gossypium hirsutum HOM05D000607 ORTHO05D000518 6.2e-09 64.3 46 71.7
Gohir.D12G229400 Gossypium hirsutum HOM05D000607 ORTHO05D000518 6.2e-09 64.3 46 71.7
Gorai.008G245700 Gossypium raimondii HOM05D000607 ORTHO05D000518 6.2e-09 64.3 46 71.7
Medtr6g045257 Medicago truncatula HOM05D000607 ORTHO05D000518 6.2e-09 64.3 46 71.7
PGR142G1784 Punica granatum HOM05D000607 ORTHO05D000518 6.2e-09 64.3 46 73.9
SalBow2G0992 Salvia bowleyana HOM05D000607 ORTHO05D000518 6.2e-09 64.3 47 66.0
TPR.G10746 Trifolium pratense HOM05D000607 ORTHO05D000518 6.2e-09 64.3 46 71.7
Dinv35213 Davidia involucrata HOM05D000262 ORTHO05D009380 1.1e-08 63.5 46 71.7
CiPaw.11G137700 Carya illinoinensis HOM05D000607 ORTHO05D000518 1.4e-08 63.2 46 67.4
Os03g0111400 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 1.4e-08 63.2 46 63.0
Cc08_g14460 Coffea canephora HOM05D000607 ORTHO05D000518 1.8e-08 62.8 46 65.2
Psat7g192960 Pisum sativum HOM05D000607 ORTHO05D000518 1.8e-08 62.8 46 69.6
PGR031G3795 Punica granatum HOM05D000607 ORTHO05D000518 1.8e-08 62.8 46 67.4
TAR636G2948 Trochodendron aralioides HOM05D000607 ORTHO05D000518 2.3e-08 62.4 46 63.0
Aqoxy7G00358 Aquilegia oxysepala HOM05D000607 ORTHO05D000518 3.1e-08 62.0 46 67.4
MBI18_g30545_MAGBIO Magnolia biondii HOM05D000607 ORTHO05D000518 3.1e-08 62.0 48 62.5
TAR636G0390 Trochodendron aralioides HOM05D000607 ORTHO05D000518 3.1e-08 62.0 46 63.0
HanXRQChr15g0495531 Helianthus annuus HOM05D000607 ORTHO05D000518 4.0e-08 61.6 44 70.5
Os04g0533900 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 4.0e-08 61.6 46 67.4
TWI39G1228 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 4.0e-08 61.6 43 76.7
ATR1126G057 Amborella trichopoda HOM05D000607 ORTHO05D000518 5.2e-08 61.2 46 69.6
TAR374G1069 Trochodendron aralioides HOM05D000607 ORTHO05D000518 5.2e-08 61.2 46 65.2
DCAR_010312 Daucus carota HOM05D000607 ORTHO05D000518 6.8e-08 60.8 46 65.2
MBI18_g37164_MAGBIO Magnolia biondii HOM05D000607 ORTHO05D000518 8.9e-08 60.5 46 63.0
TAR636G2619 Trochodendron aralioides HOM05D000607 ORTHO05D000518 3.4e-07 58.5 46 58.7
FAN10G2127 Fragaria x ananassa HOM05D022609 ORTHO05D029410 4.4e-07 58.2 35 82.9
Nn6g33494 Nelumbo nucifera HOM05D000607 ORTHO05D000518 4.4e-07 58.2 46 65.2
Psat7g192880 Pisum sativum HOM05D000607 ORTHO05D000518 4.4e-07 58.2 46 65.2
Peaxi162Scf00102g01540 Petunia axillaris HOM05D000607 ORTHO05D000518 5.8e-07 57.8 43 62.8
Ciclev10023788m.g Citrus clementina HOM05D000607 ORTHO05D000518 1.3e-06 56.6 45 60.0
DCAR_014513 Daucus carota HOM05D000607 ORTHO05D000518 2.2e-06 55.8 46 58.7
Actinidia02018 Actinidia chinensis HOM05D000607 ORTHO05D000518 3.7e-06 55.1 42 59.5
HanXRQChr06g0183821 Helianthus annuus HOM05D000607 ORTHO05D000518 4.9e-06 54.7 47 66.0


User provided reference genes

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