Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 2325.4 1185 100.0
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 2028.1 1200 86.2
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1986.8 1203 84.5
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1894.0 1204 80.7
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1840.5 1206 78.0
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1827.8 1200 78.2
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1825.8 1207 77.8
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1800.4 1206 76.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1798.1 1215 75.8
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1797.3 1207 76.1
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1795.4 1197 76.4
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1793.9 1199 75.7
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1793.5 1205 75.6
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1791.9 1206 75.9
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1786.5 1205 75.7
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1777.3 1203 75.5
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1776.5 1197 75.9
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1775.0 1197 75.3
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1773.1 1201 76.0
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1772.3 1197 75.2
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1761.5 1290 71.3
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1761.5 1290 71.3
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1756.5 1285 72.4
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1748.8 1195 74.5
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1743.0 1205 74.1
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1742.6 1195 74.6
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1741.9 1189 73.8
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1739.9 1207 74.2
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1739.9 1203 73.7
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1738.4 1205 74.2
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1736.5 1205 74.1
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1734.9 1207 72.8
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1734.9 1295 69.4
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1734.2 1203 73.3
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1732.6 1230 73.4
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1730.7 1191 74.2
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1729.9 1199 73.4
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1728.4 1219 72.7
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1727.6 1191 74.0
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1727.2 1204 73.6
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1726.1 1192 74.0
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1724.9 1192 73.9
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1724.9 1189 73.5
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1724.5 1198 73.8
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1723.8 1219 72.3
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1720.3 1202 73.5
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1719.5 1198 73.5
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1718.7 1196 73.5
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1718.4 1207 73.2
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1717.6 1204 72.5
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1716.8 1207 73.5
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1714.5 1203 73.6
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1712.2 1196 73.4
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1711.4 1205 73.0
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1710.7 1205 73.0
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1709.1 1219 71.8
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1708.0 1198 72.0
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1708.0 1192 73.4
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1705.6 1197 73.3
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1702.2 1210 72.1
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1701.8 1193 72.8
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1701.0 1191 73.0
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1695.6 1205 72.5
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1684.8 1201 71.8
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1683.3 1208 71.9
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1681.8 1202 72.0
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1681.8 1200 71.5
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1680.2 1346 67.5
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1672.9 1203 70.9
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1669.8 1189 71.2
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1669.8 1188 70.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1667.1 1201 71.9
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1666.7 1189 71.2
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1663.3 1201 71.8
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1662.5 1129 75.5
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1656.3 1189 71.1
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1649.4 1182 71.2
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1625.9 1195 70.2
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1624.4 1195 70.5
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1620.5 1219 68.7
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1618.2 1206 69.3
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1609.0 1191 70.9
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1595.9 1096 74.9
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1585.5 1201 69.4
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1553.9 1186 68.3
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1548.1 1213 66.1
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1538.1 1190 66.2
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1506.5 1200 64.4
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1478.8 1210 63.1
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1478.4 1012 74.9
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1463.7 1034 73.3
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1451.8 1048 71.3
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1447.2 1048 71.3
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1438.7 1028 72.5
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1382.9 982 72.3
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1379.0 990 72.2
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1379.0 981 72.4
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1377.1 1055 68.0
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1335.1 861 77.6
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1304.7 900 75.0
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1286.2 1216 55.7
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1271.9 830 77.8
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1268.4 923 70.1
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1178.7 1231 52.1
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1113.6 904 63.9
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 7.3e-311 1070.8 1220 49.6
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 5.0e-304 1048.1 1223 48.9
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.1e-265 919.8 1189 43.9
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 2.1e-257 893.3 1324 41.5
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.3e-248 864.0 518 84.4
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 9.0e-237 824.7 1225 40.7
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.0e-219 768.1 1134 40.9
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 2.4e-181 640.6 423 77.5
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 5.3e-144 516.5 746 43.4
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.2e-143 515.4 306 80.4
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 9.9e-143 512.3 324 77.5
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.3e-134 485.3 481 58.8
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.1e-133 482.3 431 58.9
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 8.2e-129 466.1 323 70.0
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.5e-119 435.3 292 75.0
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 3.4e-119 434.1 351 64.4
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 5.0e-110 403.7 329 66.3
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 3.9e-107 394.0 310 67.4
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.9e-94 351.3 360 52.2
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.0e-86 326.2 256 66.4
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 3.7e-81 307.8 284 53.2
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 4.0e-75 287.7 397 45.1
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.8e-59 235.7 154 73.4
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 1.7e-57 229.2 269 49.4
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.3e-49 203.0 139 73.4
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 2.7e-47 195.3 117 81.2
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 1.5e-45 189.5 116 75.9
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.2e-42 179.9 138 61.6
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 5.4e-40 171.0 164 53.7
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 4.6e-39 167.9 139 66.9
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.1e-36 159.1 256 40.2
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.9e-35 154.1 196 46.9
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.2e-32 144.8 160 51.2
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.2e-31 143.3 86 83.7
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 1.0e-30 140.2 304 29.6
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 5.1e-22 111.3 164 40.9
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 8.1e-20 104.0 71 67.6
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 1.1e-16 93.6 59 69.5
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 7.1e-16 90.9 62 69.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 9.6e-13 80.5 231 32.9
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.6e-12 79.7 47 74.5
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 2.1e-12 79.3 74 66.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 2.1e-12 79.3 74 66.2
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 1.1e-11 77.0 60 71.7
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 6.9e-11 74.3 62 61.3
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 1.5e-10 73.2 55 63.6
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 3.4e-10 72.0 70 54.3
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.4e-08 66.6 137 36.5
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 3.6e-07 62.0 38 71.1
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 6.1e-07 61.2 45 66.7
BcaC03g13346 Brassica carinata HOM05D004589 ORTHO05D023960 3.9e-06 58.5 48 70.8


User provided reference genes

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