Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 3.1e-306 1054.3 528 100.0
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.9e-194 682.9 524 68.3
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 6.1e-193 677.9 528 66.9
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 9.4e-186 654.1 527 63.9
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 2.4e-181 639.4 527 62.0
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.6e-180 636.7 526 62.2
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.9e-179 632.5 526 61.8
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.9e-178 629.8 525 61.5
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 4.2e-178 628.6 525 61.1
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.2e-177 627.1 527 61.9
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 2.7e-177 625.9 524 60.9
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.8e-176 623.2 526 61.0
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 4.0e-176 622.1 525 61.0
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 8.8e-176 620.9 527 60.2
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 2.0e-175 619.8 526 61.4
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.3e-174 617.1 521 61.4
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.7e-174 616.7 521 61.0
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 3.7e-174 615.5 521 61.0
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 3.1e-173 612.5 526 59.7
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 3.5e-172 609.0 527 58.8
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.0e-171 607.4 524 61.6
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.0e-171 607.4 524 59.7
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 1.5e-170 603.6 527 59.4
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.9e-170 603.2 520 59.6
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.9e-170 603.2 524 59.7
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 2.1e-169 599.7 524 59.0
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.0e-168 597.4 528 59.5
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.3e-168 596.3 527 57.7
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 2.3e-168 596.3 525 58.3
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.0e-168 595.9 520 59.8
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.2e-167 594.0 527 56.5
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.5e-167 593.6 527 58.1
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.0e-167 593.2 520 59.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 3.4e-167 592.4 524 58.0
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 1.7e-166 590.1 520 58.5
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 2.2e-166 589.7 527 57.5
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 1.8e-165 586.6 520 58.8
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 3.1e-165 585.9 524 57.8
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 4.1e-165 585.5 528 57.2
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 4.1e-165 585.5 528 58.1
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 5.4e-165 585.1 524 57.1
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 5.4e-165 585.1 565 54.9
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 9.2e-165 584.3 553 56.2
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.2e-164 583.9 528 57.4
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.3e-163 580.5 522 57.7
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 2.9e-163 579.3 522 56.5
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 6.6e-163 578.2 523 58.1
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 8.6e-163 577.8 522 57.3
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.3e-162 574.7 523 57.7
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.6e-161 573.5 524 56.1
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 6.1e-161 571.6 524 55.2
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.0e-160 570.9 524 55.5
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 6.8e-160 568.2 516 56.8
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 6.8e-160 568.2 516 57.0
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.2e-159 567.4 520 55.6
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 3.4e-159 565.8 528 56.1
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 7.5e-159 564.7 520 56.3
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 9.8e-159 564.3 520 55.8
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.3e-158 563.9 520 56.2
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.7e-158 563.5 520 56.7
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 2.2e-158 563.1 520 56.5
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 3.7e-158 562.4 532 56.0
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 4.9e-158 562.0 520 56.9
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 8.3e-158 561.2 527 56.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.4e-157 560.5 519 56.5
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.9e-157 560.1 520 56.5
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 7.0e-157 558.1 532 56.0
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 9.2e-157 557.8 526 56.1
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 3.5e-156 555.8 521 56.6
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.7e-155 553.5 527 56.7
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.0e-155 552.7 527 56.5
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 3.9e-155 552.4 520 55.4
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 8.6e-155 551.2 520 56.2
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 2.1e-153 546.6 507 56.0
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 3.6e-153 545.8 604 50.2
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.0e-152 542.3 527 53.7
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 5.2e-152 542.0 507 55.8
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 2.0e-151 540.0 565 51.7
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.6e-151 539.7 562 52.1
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 4.9e-150 535.4 466 60.1
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 2.1e-148 530.0 564 51.8
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 7.8e-148 528.1 522 53.1
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.9e-146 523.5 527 53.5
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 7.3e-146 521.5 523 53.0
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 8.1e-145 518.1 712 45.1
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.7e-142 510.4 522 53.3
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.4e-141 505.4 453 59.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 2.7e-140 503.1 536 50.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 6.0e-140 501.9 525 52.6
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 2.3e-139 500.0 521 52.4
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 3.4e-135 486.1 517 51.6
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.2e-134 483.4 471 55.6
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.1e-133 481.1 512 51.2
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.9e-133 480.3 471 55.4
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 5.4e-133 478.8 470 53.4
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.1e-128 464.5 467 52.9
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 3.1e-128 463.0 522 49.8
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.5e-127 460.7 538 49.3
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 6.0e-124 448.7 453 53.0
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 7.8e-124 448.4 816 35.7
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 2.4e-120 436.8 524 45.8
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 2.5e-114 416.8 528 43.0
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 4.2e-109 399.4 386 56.2
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.8e-107 394.0 430 51.4
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 5.1e-107 392.5 525 42.1
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.9e-106 390.6 407 53.3
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 7.4e-106 388.7 389 53.7
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 4.5e-103 379.4 522 41.6
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 7.9e-100 368.6 432 47.9
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 4.5e-87 326.2 296 53.4
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 7.0e-72 275.8 314 51.0
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.2e-69 266.5 303 48.5
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 7.2e-69 265.8 338 46.2
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.9e-61 241.1 168 70.8
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 8.8e-59 232.3 225 57.3
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.7e-57 228.0 290 46.6
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-56 224.9 222 55.9
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.8e-54 216.9 131 76.3
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 1.6e-52 211.5 520 28.8
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.0e-51 208.8 165 62.4
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.4e-48 198.4 140 69.3
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.9e-46 190.3 141 65.2
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.0e-44 182.6 108 78.7
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 3.6e-36 157.1 226 40.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 6.2e-36 156.4 140 54.3
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 7.3e-29 132.9 183 39.9
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 2.2e-25 121.3 147 49.7
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 6.4e-25 119.8 94 60.6
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 8.3e-25 119.4 284 32.7
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 3.2e-24 117.5 277 32.9
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.8e-23 112.8 130 46.9
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 6.2e-20 103.2 87 54.0
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 1.1e-16 92.4 51 74.5
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.9e-16 91.7 86 50.0
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.5e-13 82.0 69 56.5
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 9.6e-13 79.3 56 71.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 2.1e-12 78.2 69 55.1
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 4.8e-12 77.0 42 78.6
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 1.4e-11 75.5 69 53.6
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 7.6e-10 69.7 43 74.4
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.0e-07 60.1 47 61.7
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 3.9e-06 57.4 35 74.3
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 3.9e-06 57.4 39 74.4
CDE07G1760 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.7e-06 56.2 42 54.8


User provided reference genes

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