Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold857G53675 Striga asiatica HOM05D003297 ORTHO05D004027 1.3e-48 196.1 100 100.0
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 2.3e-40 168.7 99 83.8
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 7.3e-39 163.7 99 78.8
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 2.1e-38 162.2 99 81.8
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 2.1e-38 162.2 99 78.8
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 6.2e-38 160.6 95 81.1
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 8.1e-38 160.2 99 75.8
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 8.1e-38 160.2 99 76.8
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 1.4e-37 159.5 99 80.8
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 1.4e-37 159.5 99 80.8
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 1.4e-37 159.5 101 80.2
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 1.8e-37 159.1 101 79.2
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 2.4e-37 158.7 101 77.2
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 1.5e-36 156.0 98 78.6
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.5e-36 156.0 100 75.0
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 2.0e-36 155.6 99 77.8
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.4e-36 154.8 99 74.7
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.4e-36 154.8 99 74.7
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 3.4e-36 154.8 100 74.0
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 3.4e-36 154.8 100 79.0
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 4.4e-36 154.5 98 78.6
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 4.4e-36 154.5 98 78.6
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 4.4e-36 154.5 98 78.6
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 5.8e-36 154.1 99 76.8
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 5.8e-36 154.1 100 77.0
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 7.6e-36 153.7 99 76.8
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 7.6e-36 153.7 99 76.8
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 9.9e-36 153.3 100 78.0
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 1.3e-35 152.9 98 77.6
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 1.3e-35 152.9 99 76.8
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.3e-35 152.9 99 73.7
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 1.3e-35 152.9 101 80.2
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 1.3e-35 152.9 95 77.9
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 1.3e-35 152.9 100 77.0
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 1.7e-35 152.5 98 75.5
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 1.7e-35 152.5 100 76.0
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 1.7e-35 152.5 100 76.0
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 2.9e-35 151.8 101 75.2
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 2.9e-35 151.8 108 73.1
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 4.9e-35 151.0 100 77.0
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 6.4e-35 150.6 95 76.8
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 6.4e-35 150.6 98 74.5
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 8.4e-35 150.2 95 76.8
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 8.4e-35 150.2 99 74.7
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.1e-34 149.8 101 73.3
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 1.4e-34 149.4 98 75.5
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 1.4e-34 149.4 100 76.0
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 1.4e-34 149.4 99 72.7
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.2e-34 148.3 101 72.3
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.2e-34 148.3 101 72.3
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 3.2e-34 148.3 99 73.7
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 3.2e-34 148.3 99 72.7
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 3.2e-34 148.3 95 74.7
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 3.2e-34 148.3 100 75.0
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 3.2e-34 148.3 101 76.2
Zm00001eb121870 Zea mays HOM05D003297 ORTHO05D004027 4.2e-34 147.9 98 72.4
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 5.4e-34 147.5 100 75.0
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 5.4e-34 147.5 100 75.0
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 5.4e-34 147.5 100 75.0
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 7.1e-34 147.1 100 76.0
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 7.1e-34 147.1 99 73.7
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 9.2e-34 146.7 115 67.0
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 1.2e-33 146.4 100 70.0
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 1.6e-33 146.0 98 70.4
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 1.6e-33 146.0 100 73.0
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 1.6e-33 146.0 100 74.0
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 2.1e-33 145.6 100 74.0
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 2.7e-33 145.2 98 72.4
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 3.5e-33 144.8 100 74.0
Zm00001eb269870 Zea mays HOM05D003297 ORTHO05D004027 3.5e-33 144.8 100 70.0
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 4.6e-33 144.4 95 74.7
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 6.0e-33 144.1 101 71.3
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 6.0e-33 144.1 99 70.7
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 1.3e-32 142.9 101 72.3
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 1.3e-32 142.9 100 72.0
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 1.3e-32 142.9 100 72.0
Actinidia30893 Actinidia chinensis HOM05D003297 ORTHO05D004027 2.3e-32 142.1 100 74.0
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 2.3e-32 142.1 98 72.4
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 3.0e-32 141.7 101 73.3
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 3.9e-32 141.4 98 71.4
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 3.9e-32 141.4 97 72.2
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 3.9e-32 141.4 97 72.2
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 3.9e-32 141.4 101 73.3
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 3.9e-32 141.4 98 71.4
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 5.1e-32 141.0 101 72.3
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 8.7e-32 140.2 95 73.7
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 8.7e-32 140.2 102 71.6
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 1.5e-31 139.4 101 72.3
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 1.5e-31 139.4 98 73.5
PSO541G1735 Papaver somniferum HOM05D003297 ORTHO05D004027 2.5e-31 138.7 100 72.0
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 4.3e-31 137.9 98 70.4
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 9.6e-31 136.7 111 67.6
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 3.6e-30 134.8 100 70.0
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 6.2e-30 134.0 100 71.0
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 8.1e-30 133.7 98 68.4
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 2.4e-29 132.1 98 67.3
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 3.1e-29 131.7 101 68.3
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 3.1e-29 131.7 100 69.0
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 1.5e-28 129.4 100 69.0
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 9.9e-28 126.7 100 65.0
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 1.3e-27 126.3 98 66.3
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 2.2e-27 125.6 101 66.3
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 2.9e-27 125.2 97 67.0
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 3.8e-27 124.8 97 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 3.8e-27 124.8 100 68.0
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 3.8e-27 124.8 98 66.3
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 1.9e-26 122.5 100 64.0
CARHR103230 Cardamine hirsuta HOM05D003297 ORTHO05D004027 3.2e-26 121.7 91 68.1
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 4.2e-26 121.3 98 63.3
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 7.1e-26 120.6 98 63.3
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 1.6e-25 119.4 98 63.3
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 1.6e-25 119.4 98 62.2
SGA_v2.0_scaffold18G08223 Striga asiatica HOM05D003297 ORTHO05D004027 2.1e-25 119.0 71 90.1
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 2.7e-25 118.6 98 63.3
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 3.5e-25 118.2 98 62.2
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 2.3e-24 115.5 97 62.9
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 2.3e-24 115.5 97 62.9
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 2.3e-24 115.5 99 59.6
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 3.0e-24 115.2 97 62.9
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 3.0e-24 115.2 97 62.9
Nn1g00078 Nelumbo nucifera HOM05D003297 ORTHO05D004027 5.1e-24 114.4 80 73.8
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 1.1e-23 113.2 98 60.2
HanXRQChr17g0550181 Helianthus annuus HOM05D003297 ORTHO05D004027 1.5e-23 112.8 69 75.4
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 1.9e-23 112.5 97 61.9
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 1.9e-23 112.5 101 61.4
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 4.3e-23 111.3 98 60.2
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 5.6e-23 110.9 97 59.8
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 1.3e-22 109.8 103 59.2
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 2.1e-22 109.0 101 59.4
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 2.1e-22 109.0 101 63.4
Lsat_1_v5_gn_1_126600 Lactuca sativa HOM05D003297 ORTHO05D004027 1.2e-20 103.2 72 70.8
Lsat_1_v5_gn_2_17820 Lactuca sativa HOM05D003297 ORTHO05D004027 2.0e-20 102.4 84 60.7
Potri.017G066200 Populus trichocarpa HOM05D003297 ORTHO05D004027 2.6e-20 102.1 107 58.9
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.8e-20 100.9 89 61.8
Gohir.A09G034300 Gossypium hirsutum HOM05D003297 ORTHO05D004027 5.4e-18 94.4 99 53.5
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 1.8e-16 89.4 50 82.0
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.0e-16 88.6 49 79.6
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.0e-16 88.6 49 79.6
CSS0020533 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 6.7e-16 87.4 49 77.6
CAN.G1161.37 Capsicum annuum HOM05D003297 ORTHO05D004027 6.7e-16 87.4 48 83.3
FvH4_6g20890 Fragaria vesca HOM05D003297 ORTHO05D004027 6.7e-16 87.4 49 77.6
FAN14G3337 Fragaria x ananassa HOM05D003297 ORTHO05D004027 6.7e-16 87.4 50 78.0
TAR376G0821 Trochodendron aralioides HOM05D003297 ORTHO05D004027 6.7e-16 87.4 48 83.3
BcaC02g10143 Brassica carinata HOM05D002632 ORTHO05D000523 8.7e-16 87.0 89 57.3
arahy.Tifrunner.gnm1.ann1.XD375C Arachis hypogaea HOM05D003297 ORTHO05D004027 1.1e-15 86.7 48 81.2
Peaxi162Scf00480g00212 Petunia axillaris HOM05D003297 ORTHO05D004027 1.5e-15 86.3 49 83.7
FAN01G2972 Fragaria x ananassa HOM05D003297 ORTHO05D004027 9.6e-15 83.6 98 52.0
arahy.Tifrunner.gnm1.ann1.2MK8LH Arachis hypogaea HOM05D003297 ORTHO05D004027 6.2e-14 80.9 50 72.0
HanXRQChr17g0534591 Helianthus annuus HOM05D003297 ORTHO05D004027 1.4e-13 79.7 49 73.5
SGA_v2.0_scaffold481G52325 Striga asiatica HOM05D003297 ORTHO05D004027 1.8e-13 79.3 49 85.7
CSS0032708 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.2e-12 76.6 47 68.1
Lsat_1_v5_gn_4_110841 Lactuca sativa HOM05D003297 ORTHO05D004027 2.0e-12 75.9 48 68.8
Cre06.g291900 Chlamydomonas reinhardtii HOM05D003297 ORTHO05D004027 2.6e-12 75.5 96 42.7
Cc00_g35860 Coffea canephora HOM05D003297 ORTHO05D004027 4.5e-12 74.7 50 76.0
CDE07G1941 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 7.6e-12 73.9 61 65.6
PSO017G7282 Papaver somniferum HOM05D003297 ORTHO05D004027 1.3e-11 73.2 42 76.2
C09p39960 Brassica napus HOM05D002632 ORTHO05D002881 1.7e-11 72.8 51 68.6
Duzib147G0281 Durio zibethinus HOM05D003297 ORTHO05D004027 1.7e-11 72.8 50 76.0
HanXRQChr17g0534621 Helianthus annuus HOM05D003297 ORTHO05D004027 2.2e-11 72.4 44 72.7
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 4.9e-11 71.2 60 70.0
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 8.4e-11 70.5 54 70.4
arahy.Tifrunner.gnm1.ann1.6W6YW6 Arachis hypogaea HOM05D003297 ORTHO05D004027 1.9e-10 69.3 36 83.3
arahy.Tifrunner.gnm1.ann1.BJ0JYY Arachis hypogaea HOM05D003297 ORTHO05D004027 1.9e-10 69.3 57 59.6
HanXRQChr17g0534581 Helianthus annuus HOM05D003297 ORTHO05D004027 7.1e-10 67.4 44 75.0
HanXRQChr15g0474981 Helianthus annuus HOM05D003297 ORTHO05D004027 2.1e-09 65.9 43 67.4
RcHm_v2.0_Chr2g0174741 Rosa chinensis HOM05D003297 ORTHO05D004027 2.7e-09 65.5 98 41.8
FAN14G1208 Fragaria x ananassa HOM05D003297 ORTHO05D004027 4.6e-09 64.7 48 70.8
QL10p019533 Quercus lobata HOM05D000003 ORTHO05D000004 7.9e-09 63.9 40 67.5
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.0e-08 63.5 54 68.5
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.0e-08 63.5 54 68.5
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.0e-08 63.5 54 68.5
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.0e-08 63.5 54 68.5
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 3.0e-08 62.0 54 66.7
Potri.001G334100 Populus trichocarpa HOM05D003297 ORTHO05D004027 3.0e-08 62.0 52 67.3
arahy.Tifrunner.gnm1.ann1.JVM03Q Arachis hypogaea HOM05D003297 ORTHO05D004027 4.3e-07 58.2 38 71.1
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 4.3e-07 58.2 54 66.7
CSS0014178 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D108979 7.4e-07 57.4 60 48.3
Oeu050424.1 Olea europaea HOM05D003297 ORTHO05D004027 7.4e-07 57.4 30 83.3
Lsat_1_v5_gn_1_13160 Lactuca sativa HOM05D000942 ORTHO05D020824 2.8e-06 55.5 55 61.8
PRCOL_00004862 Prasinoderma coloniale HOM05D003297 ORTHO05D004027 3.7e-06 55.1 102 41.2


User provided reference genes

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