Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 1.7e-126 456.1 238 100.0
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 6.4e-57 224.9 283 50.2
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 3.3e-53 212.6 291 45.7
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 5.2e-51 205.3 305 42.6
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.8e-43 180.3 291 38.5
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 3.4e-42 176.0 282 39.0
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.4e-42 176.0 282 39.4
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 5.8e-42 175.3 358 35.2
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 7.5e-42 174.9 291 38.8
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 7.5e-42 174.9 291 39.2
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 7.5e-42 174.9 291 39.2
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 9.9e-42 174.5 297 39.4
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.2e-41 173.3 291 39.5
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 2.9e-41 172.9 293 37.5
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.9e-41 172.9 282 38.3
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.9e-41 172.9 291 38.5
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 6.4e-41 171.8 271 39.5
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 8.3e-41 171.4 302 38.4
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.1e-40 171.0 291 37.5
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.9e-40 170.2 291 37.8
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.9e-40 170.2 297 38.4
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 2.4e-40 169.9 293 37.9
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 3.2e-40 169.5 291 37.8
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.1e-40 169.1 297 38.0
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 9.2e-40 167.9 150 60.7
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.2e-39 167.5 297 37.7
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 2.7e-39 166.4 282 38.7
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 2.7e-39 166.4 285 40.4
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 3.5e-39 166.0 285 40.0
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 4.6e-39 165.6 152 56.6
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 4.6e-39 165.6 291 36.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 6.0e-39 165.2 185 50.8
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 6.0e-39 165.2 141 59.6
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 7.8e-39 164.9 150 60.0
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.0e-38 164.5 152 57.9
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.0e-38 164.5 150 58.7
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.0e-38 164.5 282 37.9
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.3e-38 164.1 150 56.7
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.3e-38 164.1 150 58.7
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.3e-38 164.1 150 58.0
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.7e-38 163.7 139 61.2
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 2.3e-38 163.3 130 65.4
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 3.0e-38 162.9 291 38.1
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.9e-38 162.5 139 59.7
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.9e-38 162.5 291 36.8
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 5.1e-38 162.2 282 37.6
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 5.1e-38 162.2 150 56.7
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 5.1e-38 162.2 152 56.6
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 6.6e-38 161.8 130 63.8
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 8.6e-38 161.4 291 38.1
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 8.6e-38 161.4 282 37.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.1e-37 161.0 190 50.5
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.1e-37 161.0 150 57.3
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.1e-37 161.0 150 58.0
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.5e-37 160.6 190 50.5
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.5e-37 160.6 130 63.8
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.5e-37 160.6 150 55.3
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.9e-37 160.2 187 48.1
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.9e-37 160.2 150 56.0
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.5e-37 159.8 141 59.6
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.5e-37 159.8 141 59.6
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.5e-37 159.8 245 40.4
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 3.3e-37 159.5 141 59.6
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 3.3e-37 159.5 291 36.1
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 5.6e-37 158.7 292 37.0
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 5.6e-37 158.7 150 59.3
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 5.6e-37 158.7 141 58.9
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 5.6e-37 158.7 206 46.6
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 5.6e-37 158.7 130 63.1
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 7.3e-37 158.3 150 55.3
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 7.3e-37 158.3 161 55.3
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 9.5e-37 157.9 150 56.7
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 9.5e-37 157.9 139 59.7
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.2e-36 157.5 130 62.3
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.2e-36 157.5 150 55.3
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.6e-36 157.1 130 62.3
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.6e-36 157.1 150 56.0
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.1e-36 156.8 130 63.8
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 2.8e-36 156.4 150 56.7
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.8e-36 156.4 271 38.7
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 2.8e-36 156.4 139 60.4
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 3.6e-36 156.0 184 50.0
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.7e-36 155.6 140 57.9
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 4.7e-36 155.6 159 51.6
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 6.2e-36 155.2 152 57.2
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 6.2e-36 155.2 130 62.3
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 8.1e-36 154.8 152 57.9
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 8.1e-36 154.8 152 57.9
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 8.1e-36 154.8 163 54.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.1e-35 154.5 152 57.2
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.1e-35 154.5 150 55.3
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.1e-35 154.5 139 57.6
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.4e-35 154.1 152 57.9
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.4e-35 154.1 165 52.7
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.4e-35 153.3 150 55.3
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 3.1e-35 152.9 130 60.0
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 4.0e-35 152.5 130 60.8
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 5.2e-35 152.1 165 52.1
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 6.8e-35 151.8 141 59.6
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 8.9e-35 151.4 187 47.6
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.2e-34 151.0 144 56.2
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.5e-34 150.6 150 54.0
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 4.4e-34 149.1 322 34.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.4e-34 149.1 148 54.1
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 7.6e-34 148.3 152 53.9
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.9e-33 146.4 300 34.7
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 4.2e-32 142.5 130 58.5
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 5.4e-32 142.1 142 54.9
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 3.5e-31 139.4 142 52.8
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 3.5e-31 139.4 130 55.4
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 7.8e-31 138.3 130 54.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 5.1e-30 135.6 130 53.8
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.5e-29 134.0 241 37.3
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.5e-29 134.0 178 42.7
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 9.6e-29 131.3 129 51.9
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.2e-28 131.0 156 51.3
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 3.6e-28 129.4 152 48.7
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.1e-27 127.9 154 48.1
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 5.8e-26 122.1 125 53.6
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.3e-25 120.9 129 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.9e-25 119.8 129 50.4
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 6.4e-25 118.6 129 49.6
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 4.2e-24 115.9 95 64.2
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 6.0e-23 112.1 130 50.0
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 1.9e-21 107.1 144 41.0
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 5.6e-21 105.5 138 42.8
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.4e-18 96.3 86 57.0
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 2.2e-17 93.6 92 58.7
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.6e-12 77.4 45 75.6
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.4e-11 73.6 81 53.1
SGA_v2.0_scaffold131G34462 Striga asiatica HOM05D003844 ORTHO05D004534 2.0e-10 70.5 62 64.5
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 4.9e-09 65.9 161 30.4
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.8e-06 57.4 34 70.6


User provided reference genes

Program Settings