Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 2.3e-81 305.4 149 100.0
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 3.3e-19 99.0 92 59.8
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 5.6e-19 98.2 221 36.2
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 2.4e-17 92.8 92 55.4
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 5.8e-16 88.2 61 65.6
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.9e-14 83.2 92 48.9
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.2e-14 82.4 91 47.3
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 4.2e-14 82.0 102 46.1
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 5.4e-14 81.6 92 46.7
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 5.4e-14 81.6 89 49.4
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 9.3e-14 80.9 91 47.3
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.2e-13 80.5 92 46.7
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 4.6e-13 78.6 89 47.2
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.0e-12 77.4 94 47.9
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.0e-12 77.4 92 45.7
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.8e-12 76.6 90 44.4
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.8e-12 76.6 92 43.5
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 1.8e-12 76.6 83 48.2
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 2.3e-12 76.3 92 46.7
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 3.0e-12 75.9 87 48.3
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 3.9e-12 75.5 92 43.5
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.9e-12 75.5 92 43.5
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 3.9e-12 75.5 115 39.1
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 5.1e-12 75.1 92 43.5
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.1e-12 75.1 92 43.5
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 5.1e-12 75.1 57 63.2
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 5.1e-12 75.1 90 41.1
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.1e-12 75.1 72 51.4
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.1e-12 75.1 72 51.4
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.1e-12 75.1 72 51.4
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 5.1e-12 75.1 72 51.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 5.1e-12 75.1 86 44.2
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 5.1e-12 75.1 139 38.1
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 6.7e-12 74.7 83 48.2
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 6.7e-12 74.7 88 44.3
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 6.7e-12 74.7 92 41.3
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 6.7e-12 74.7 92 41.3
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 8.7e-12 74.3 92 43.5
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 8.7e-12 74.3 92 41.3
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.1e-11 73.9 83 48.2
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.1e-11 73.9 92 41.3
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.1e-11 73.9 92 44.6
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.5e-11 73.6 55 56.4
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.5e-11 73.6 64 54.7
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.5e-11 73.6 79 49.4
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 1.5e-11 73.6 86 44.2
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.5e-11 73.6 92 45.7
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.9e-11 73.2 81 49.4
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.9e-11 73.2 100 42.0
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.5e-11 72.8 86 46.5
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.5e-11 72.8 60 56.7
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 2.5e-11 72.8 90 44.4
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 4.3e-11 72.0 50 64.0
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 4.3e-11 72.0 100 46.0
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 4.3e-11 72.0 87 42.5
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 5.6e-11 71.6 55 58.2
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 5.6e-11 71.6 95 44.2
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 7.4e-11 71.2 60 58.3
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 7.4e-11 71.2 50 62.0
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 7.4e-11 71.2 92 44.6
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 7.4e-11 71.2 88 45.5
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 9.6e-11 70.9 92 41.3
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 9.6e-11 70.9 92 43.5
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 9.6e-11 70.9 87 42.5
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-10 70.5 55 60.0
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.3e-10 70.5 59 55.9
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-10 70.5 87 43.7
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-10 70.5 87 43.7
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.3e-10 70.5 90 41.1
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.3e-10 70.5 60 55.0
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.3e-10 70.5 82 47.6
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.3e-10 70.5 88 45.5
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.3e-10 70.5 57 57.9
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.6e-10 70.1 87 42.5
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-10 69.7 48 64.6
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 2.1e-10 69.7 86 44.2
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 2.1e-10 69.7 84 45.2
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 2.1e-10 69.7 85 43.5
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.8e-10 69.3 72 48.6
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.7e-10 68.9 95 43.2
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 8.1e-10 67.8 58 53.4
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-09 67.4 117 37.6
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.1e-09 67.4 50 62.0
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.1e-09 67.4 85 42.4
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.1e-09 67.4 85 42.4
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.4e-09 67.0 52 61.5
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.8e-09 66.6 50 64.0
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.8e-09 66.6 70 45.7
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.8e-09 66.6 86 41.9
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.8e-09 66.6 89 42.7
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 3.1e-09 65.9 111 40.5
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.1e-09 65.9 87 46.0
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.1e-09 65.9 87 46.0
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 3.1e-09 65.9 82 45.1
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.1e-09 65.9 83 41.0
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.0e-09 65.5 50 60.0
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-09 65.1 80 43.8
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.3e-09 65.1 74 47.3
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 5.3e-09 65.1 74 43.2
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 6.9e-09 64.7 63 47.6
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.9e-09 64.7 46 60.9
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 9.0e-09 64.3 82 46.3
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 9.0e-09 64.3 50 60.0
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-08 63.9 57 54.4
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.5e-08 63.5 44 65.9
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.5e-08 63.5 53 52.8
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.0e-08 63.2 61 45.9
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.4e-08 62.4 105 41.0
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 3.4e-08 62.4 76 47.4
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 3.4e-08 62.4 98 40.8
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 3.4e-08 62.4 88 39.8
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-08 62.0 50 58.0
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 4.5e-08 62.0 43 62.8
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 7.6e-08 61.2 86 44.2
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 7.6e-08 61.2 59 49.2
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.7e-07 60.1 82 45.1
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.2e-07 59.7 82 42.7
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.2e-07 59.7 41 63.4
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.2e-07 59.7 76 43.4
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 6.4e-07 58.2 74 45.9
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 6.4e-07 58.2 85 44.7
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 8.4e-07 57.8 55 52.7
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.1e-06 57.4 55 50.9
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.1e-06 57.4 43 60.5
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.4e-06 57.0 53 52.8
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.9e-06 56.6 39 71.8
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.9e-06 56.6 39 71.8
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 2.4e-06 56.2 44 54.5
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.2e-06 55.8 85 40.0
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 5.5e-06 55.1 44 54.5
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 7.1e-06 54.7 73 39.7
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 9.3e-06 54.3 60 46.7


User provided reference genes

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