Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 4.9e-61 237.7 124 100.0
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 3.0e-18 95.5 56 78.6
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 5.2e-18 94.7 52 86.5
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 6.8e-18 94.4 56 80.4
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 6.8e-18 94.4 52 86.5
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 6.8e-18 94.4 53 84.9
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 8.8e-18 94.0 62 71.0
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 1.2e-17 93.6 52 84.6
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 1.2e-17 93.6 52 84.6
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 1.2e-17 93.6 52 84.6
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 1.2e-17 93.6 53 81.1
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 1.5e-17 93.2 84 59.5
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 2.0e-17 92.8 52 84.6
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 2.0e-17 92.8 56 78.6
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 2.0e-17 92.8 52 82.7
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 2.0e-17 92.8 52 82.7
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 2.0e-17 92.8 52 82.7
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 2.0e-17 92.8 55 78.2
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 2.6e-17 92.4 51 84.3
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 4.4e-17 91.7 69 69.6
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 4.4e-17 91.7 51 86.3
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 4.4e-17 91.7 59 76.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 4.4e-17 91.7 54 77.8
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 4.4e-17 91.7 51 86.3
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 4.4e-17 91.7 52 82.7
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 7.5e-17 90.9 51 84.3
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 7.5e-17 90.9 52 80.8
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 7.5e-17 90.9 52 80.8
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 7.5e-17 90.9 60 75.0
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 9.8e-17 90.5 55 78.2
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 9.8e-17 90.5 50 86.0
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 9.8e-17 90.5 50 86.0
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 9.8e-17 90.5 54 81.5
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 9.8e-17 90.5 52 84.6
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 9.8e-17 90.5 52 78.8
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 9.8e-17 90.5 50 90.0
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 9.8e-17 90.5 52 80.8
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 80.8
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 1.3e-16 90.1 53 79.2
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 1.3e-16 90.1 52 78.8
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 1.7e-16 89.7 52 80.8
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 1.7e-16 89.7 52 80.8
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.7e-16 89.7 53 81.1
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 1.7e-16 89.7 52 78.8
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 1.7e-16 89.7 51 82.4
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 1.7e-16 89.7 52 78.8
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 1.7e-16 89.7 52 78.8
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 1.7e-16 89.7 51 82.4
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 2.2e-16 89.4 52 80.8
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 2.2e-16 89.4 52 82.7
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.2e-16 89.4 50 88.0
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 2.8e-16 89.0 51 84.3
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 2.8e-16 89.0 52 78.8
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 2.8e-16 89.0 52 78.8
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 2.8e-16 89.0 51 82.4
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 2.8e-16 89.0 51 78.4
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 3.7e-16 88.6 52 78.8
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.7e-16 88.6 52 82.7
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.7e-16 88.6 52 82.7
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.7e-16 88.6 52 82.7
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.7e-16 88.6 52 82.7
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 3.7e-16 88.6 50 86.0
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 3.7e-16 88.6 52 82.7
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 3.7e-16 88.6 52 80.8
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 3.7e-16 88.6 52 78.8
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 4.8e-16 88.2 52 80.8
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 6.3e-16 87.8 52 78.8
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 6.3e-16 87.8 52 78.8
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 6.3e-16 87.8 52 78.8
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 6.3e-16 87.8 51 78.4
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 6.3e-16 87.8 51 78.4
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 8.3e-16 87.4 53 77.4
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 1.1e-15 87.0 52 78.8
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 1.1e-15 87.0 51 78.4
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 1.1e-15 87.0 52 76.9
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 1.4e-15 86.7 52 78.8
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.4e-15 86.7 93 58.1
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 1.4e-15 86.7 52 76.9
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.4e-15 86.7 53 79.2
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 1.4e-15 86.7 52 78.8
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.8e-15 86.3 52 76.9
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 2.4e-15 85.9 94 54.3
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 2.4e-15 85.9 51 78.4
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 2.4e-15 85.9 52 75.0
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 2.4e-15 85.9 50 84.0
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 3.1e-15 85.5 52 80.8
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 3.1e-15 85.5 53 77.4
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 4.1e-15 85.1 52 80.8
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 4.1e-15 85.1 66 65.2
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 4.1e-15 85.1 52 76.9
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 4.1e-15 85.1 54 74.1
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 4.1e-15 85.1 50 78.0
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 4.1e-15 85.1 50 80.0
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 5.4e-15 84.7 50 84.0
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 5.4e-15 84.7 53 77.4
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 5.4e-15 84.7 52 75.0
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 5.4e-15 84.7 52 80.8
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 5.4e-15 84.7 52 75.0
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 7.0e-15 84.3 52 78.8
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 7.0e-15 84.3 51 72.5
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 7.0e-15 84.3 51 80.4
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 9.1e-15 84.0 52 75.0
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 9.1e-15 84.0 57 71.9
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 9.1e-15 84.0 53 79.2
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.2e-14 83.6 53 75.5
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.6e-14 83.2 50 76.0
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 1.6e-14 83.2 50 80.0
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 2.0e-14 82.8 52 71.2
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.0e-14 82.8 50 80.0
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.0e-14 82.8 52 73.1
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 2.7e-14 82.4 50 78.0
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 3.5e-14 82.0 50 74.0
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.5e-14 82.0 52 78.8
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 3.5e-14 82.0 52 78.8
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 3.5e-14 82.0 57 70.2
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 3.5e-14 82.0 50 78.0
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 3.5e-14 82.0 98 52.0
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 4.5e-14 81.6 53 75.5
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 4.5e-14 81.6 50 76.0
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 5.9e-14 81.3 50 76.0
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 7.7e-14 80.9 53 71.7
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 7.7e-14 80.9 50 78.0
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 7.7e-14 80.9 51 72.5
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.0e-13 80.5 82 52.4
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.0e-13 80.5 52 76.9
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 1.0e-13 80.5 51 72.5
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.0e-13 80.5 50 76.0
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.3e-13 80.1 50 76.0
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.3e-13 80.1 50 76.0
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 1.7e-13 79.7 52 71.2
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.7e-13 79.7 52 71.2
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 2.2e-13 79.3 50 74.0
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 2.2e-13 79.3 52 75.0
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 3.8e-13 78.6 52 75.0
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.8e-13 78.6 52 73.1
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 5.0e-13 78.2 52 73.1
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 5.0e-13 78.2 63 61.9
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 6.5e-13 77.8 62 64.5
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 8.5e-13 77.4 49 73.5
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 8.5e-13 77.4 52 73.1
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 8.5e-13 77.4 52 73.1
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 8.5e-13 77.4 52 73.1
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 1.1e-12 77.0 52 69.2
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 1.5e-12 76.6 50 70.0
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.9e-12 76.3 52 69.2
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 1.9e-12 76.3 50 72.0
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 3.2e-12 75.5 51 74.5
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 4.2e-12 75.1 43 83.7
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 5.5e-12 74.7 52 69.2
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 9.4e-12 73.9 44 84.1
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 1.6e-11 73.2 56 67.9
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 6.1e-11 71.2 50 66.0
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 5.2e-10 68.2 43 76.7
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 1.2e-09 67.0 35 82.9
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 3.7e-08 62.0 43 69.8
C02p14630 Brassica napus HOM05D001074 ORTHO05D001188 6.3e-08 61.2 58 58.6
C06p07750 Brassica napus HOM05D001074 ORTHO05D001188 6.3e-08 61.2 58 58.6
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 6.3e-08 61.2 34 88.2
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.1e-07 60.5 34 79.4
C06p15650 Brassica napus HOM05D001074 ORTHO05D001188 1.8e-07 59.7 58 56.9
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 1.6e-06 56.6 74 47.3
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 2.0e-06 56.2 44 56.8
BolC2t07590H Brassica oleracea HOM05D001074 ORTHO05D001188 2.7e-06 55.8 47 59.6
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 3.5e-06 55.5 93 40.9


User provided reference genes

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