Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 2356.3 1248 100.0
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1818.5 1313 74.0
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1705.3 1308 71.4
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1679.8 1323 70.1
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1549.6 1319 65.1
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1539.2 1317 64.6
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1525.8 1241 66.5
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1505.7 1243 65.6
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1502.6 1236 66.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1484.9 1315 63.0
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1473.0 1241 64.2
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1465.3 1315 61.2
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1459.9 1205 65.6
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1459.1 1338 62.6
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1454.1 1350 59.8
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1451.8 1241 64.0
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1443.3 1374 60.2
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1439.9 1348 60.8
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1438.7 1316 60.9
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1436.0 1332 60.1
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1430.2 1219 64.0
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1429.8 1235 62.7
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1428.3 1239 61.3
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1426.4 1378 59.9
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1426.0 1196 64.0
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1425.2 1316 60.8
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1424.5 1317 59.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1424.1 1314 60.1
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1421.0 1316 60.3
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1419.8 1257 62.2
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1415.6 1304 59.9
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1412.9 1193 63.0
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1412.5 1242 62.5
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1412.5 1193 64.3
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1411.4 1319 59.4
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1411.0 1253 60.9
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1410.6 1243 60.7
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1410.2 1202 62.6
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1404.4 1192 63.8
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1404.0 1188 64.1
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1403.3 1314 60.9
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1401.3 1115 65.1
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1401.0 1232 61.4
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1399.4 1265 61.3
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1399.0 1188 64.0
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1399.0 1256 61.2
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1397.5 1326 60.0
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1392.1 1319 58.0
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1389.8 1317 60.0
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1386.3 1323 59.1
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1382.5 1304 60.5
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1382.5 1314 60.0
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1378.6 1147 64.2
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1377.1 1217 62.5
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1371.7 1313 58.9
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1369.8 1314 59.8
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1368.2 1202 61.1
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1366.7 1251 61.1
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1363.6 1239 60.3
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1361.7 1377 56.7
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1359.7 1226 60.8
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1359.7 1199 61.1
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1359.4 1217 62.0
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1356.7 1198 61.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1351.7 1240 59.5
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1350.5 1313 58.3
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1349.0 1324 58.5
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1343.2 1324 58.3
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1335.5 1170 62.6
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1334.3 1259 60.5
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1330.9 1312 56.8
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1330.9 1169 62.1
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1328.2 1255 59.4
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1321.6 1307 56.7
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1316.6 1383 55.0
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1302.0 1104 62.1
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1298.9 1230 58.9
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1295.8 1253 58.7
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1285.0 1339 54.8
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1270.8 1206 58.5
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1268.8 1336 54.3
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1265.4 1252 57.3
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1260.4 1330 54.4
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1256.9 1087 61.3
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1252.3 1208 57.8
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1245.3 1204 58.1
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1245.3 1204 58.1
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1240.3 1189 57.7
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1239.9 1273 55.5
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1230.7 1162 58.9
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1228.8 1237 55.9
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1225.7 1136 59.6
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1223.4 1196 57.6
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1214.1 1340 51.9
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1213.7 1198 56.2
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1200.7 1148 57.7
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1197.6 1134 57.9
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1158.3 1274 53.4
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1139.0 1147 56.4
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1092.4 1140 55.2
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 6.7e-307 1057.7 959 62.0
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 8.2e-305 1050.8 1164 50.8
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 3.9e-299 1031.9 733 73.4
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 2.2e-297 1026.2 1376 45.3
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 4.1e-296 1021.9 1183 49.1
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 1.3e-294 1016.9 1269 47.4
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 2.7e-276 956.1 1155 46.8
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 7.0e-272 941.4 1231 45.2
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 2.4e-248 863.2 715 64.3
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 7.8e-215 751.9 1029 43.8
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 4.9e-209 732.6 1320 39.1
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 2.2e-177 627.5 436 72.7
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.5e-173 614.8 820 48.7
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.7e-154 550.8 551 58.6
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.4e-150 538.5 699 48.9
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 5.4e-147 526.6 1157 33.5
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 7.7e-146 522.7 1219 33.1
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 9.5e-144 515.8 1157 33.7
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.4e-139 501.9 1145 32.4
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 6.1e-135 486.5 607 46.1
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 8.9e-134 482.6 550 51.8
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.5e-133 481.9 465 56.6
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.2e-131 474.2 1083 32.0
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 7.0e-123 446.4 1140 30.9
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.3e-112 411.0 1057 32.4
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 3.6e-103 380.9 1237 27.0
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.5e-101 375.6 1051 30.9
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 9.3e-75 286.6 247 59.9
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.1e-72 279.6 478 38.5
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.1e-72 279.6 478 38.3
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 9.4e-59 233.4 290 47.6
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-46 193.4 217 52.1
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 7.7e-45 187.2 1205 23.8
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.7e-37 160.6 347 32.9
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.9e-35 156.0 1110 24.1
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.4e-30 139.0 129 53.5
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 4.5e-29 134.8 134 54.5
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.5e-27 129.0 98 65.3
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.1e-22 111.7 122 52.5
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.9e-19 102.8 191 39.8
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.3e-19 102.1 58 81.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 3.6e-18 98.6 187 35.8
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 5.2e-17 94.7 117 47.0
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.0e-16 92.8 61 73.8
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.9e-14 86.3 68 57.4
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 2.0e-13 82.8 82 57.3
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 4.6e-13 81.6 60 70.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 4.6e-13 81.6 60 70.0
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.1e-11 77.0 96 43.8
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 1.8e-09 69.7 51 70.6
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.6e-08 65.9 41 85.4
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 2.2e-07 62.8 98 46.9
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 1.1e-06 60.5 447 24.4
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 2.4e-06 59.3 55 58.2
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 2.4e-06 59.3 40 65.0
Zm00001eb132650 Zea mays HOM05D004672 ORTHO05D005732 9.2e-06 57.4 50 48.0


User provided reference genes

Program Settings