Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.2e-104 383.3 203 100.0
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.5e-83 313.2 203 77.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.9e-78 296.2 203 77.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.9e-74 282.3 200 76.5
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 5.4e-73 278.1 181 78.5
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 6.0e-72 274.6 182 75.8
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 6.0e-72 274.6 225 70.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.0e-71 272.3 186 73.7
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.1e-70 270.4 188 72.9
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.5e-70 270.0 198 71.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.9e-70 269.6 174 79.3
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 9.5e-70 267.3 195 69.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.6e-69 266.5 186 72.6
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.8e-69 265.8 174 77.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 3.6e-69 265.4 183 72.7
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 6.2e-69 264.6 172 78.5
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 8.1e-69 264.2 190 69.5
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 2.3e-68 262.7 182 73.6
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 5.2e-68 261.5 179 71.5
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 6.8e-68 261.2 182 73.6
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.9e-68 260.8 186 73.1
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.0e-67 259.6 180 73.9
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.6e-67 259.2 193 67.9
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.6e-67 259.2 175 76.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.4e-67 258.8 182 72.0
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.4e-67 258.8 188 68.1
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 4.4e-67 258.5 179 76.0
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 4.4e-67 258.5 188 68.6
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 9.9e-67 257.3 175 76.6
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 9.9e-67 257.3 175 76.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.7e-66 256.5 170 74.1
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.7e-66 256.5 200 65.0
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.2e-66 256.1 172 72.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.9e-66 255.8 210 65.2
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.9e-66 255.8 171 71.9
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.9e-66 255.8 179 72.1
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 6.4e-66 254.6 185 69.2
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.4e-66 254.2 160 80.0
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.4e-66 254.2 199 65.3
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 8.4e-66 254.2 185 69.2
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.1e-65 253.8 178 73.0
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.9e-65 253.1 185 69.2
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.9e-65 253.1 194 67.5
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.9e-65 253.1 180 73.3
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.9e-65 253.1 197 66.5
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.4e-65 252.7 195 66.2
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 2.4e-65 252.7 188 68.1
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.4e-65 252.7 183 70.5
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.4e-65 252.7 178 71.9
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 3.2e-65 252.3 185 68.1
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 4.1e-65 251.9 171 75.4
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 5.4e-65 251.5 202 64.9
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 5.4e-65 251.5 202 64.9
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.4e-65 251.5 178 70.8
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 7.1e-65 251.1 178 70.2
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 9.2e-65 250.8 173 71.7
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.6e-64 250.0 167 73.1
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.1e-64 249.6 176 71.6
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.1e-64 249.6 176 71.6
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 2.7e-64 249.2 176 71.6
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 2.7e-64 249.2 176 71.6
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.5e-64 248.8 177 70.6
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 6.0e-64 248.1 173 73.4
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 7.8e-64 247.7 182 68.1
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.3e-63 246.1 202 65.3
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.9e-63 245.4 182 68.1
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 5.1e-63 245.0 176 69.9
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.6e-63 244.2 180 70.0
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.5e-62 242.7 182 67.6
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.3e-62 242.3 195 66.2
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 4.3e-62 241.9 185 67.0
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.6e-62 241.5 226 60.2
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.2e-61 240.4 167 70.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.6e-61 240.0 197 62.9
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.1e-61 239.6 164 73.8
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.8e-61 239.2 174 66.1
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.8e-61 239.2 178 66.9
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.8e-61 239.2 169 70.4
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.6e-61 238.8 199 59.8
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 3.6e-61 238.8 202 63.4
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 4.7e-61 238.4 189 64.0
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 6.2e-61 238.0 180 67.2
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.2e-61 238.0 172 68.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 6.2e-61 238.0 178 67.4
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.1e-60 237.3 202 60.4
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.1e-60 237.3 202 62.9
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.1e-60 237.3 178 68.5
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.8e-60 236.5 161 72.7
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 2.4e-60 236.1 181 66.9
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 4.0e-60 235.3 202 62.4
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 5.2e-60 235.0 203 60.1
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 6.8e-60 234.6 150 74.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 8.9e-60 234.2 190 64.7
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.2e-59 233.8 209 58.9
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.0e-59 233.0 163 73.0
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 4.4e-59 231.9 163 72.4
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 5.8e-59 231.5 199 60.8
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.3e-58 230.3 178 65.2
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.7e-58 229.9 178 67.4
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.9e-58 229.2 183 66.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 4.9e-58 228.4 169 70.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.9e-58 228.4 170 68.2
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 8.4e-58 227.6 181 65.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-57 226.9 185 65.4
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.9e-57 226.5 189 59.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.9e-57 226.5 178 66.9
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 7.1e-57 224.6 175 66.3
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.3e-57 224.2 183 65.0
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 9.3e-57 224.2 202 59.4
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 9.3e-57 224.2 188 62.2
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.6e-56 223.4 193 61.7
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 2.1e-56 223.0 203 61.1
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.7e-56 222.6 178 64.0
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 6.0e-56 221.5 233 51.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 6.6e-55 218.0 181 64.1
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 6.6e-55 218.0 180 63.3
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.1e-53 213.0 208 57.7
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.1e-53 213.0 199 58.3
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.2e-51 207.2 197 59.4
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.2e-51 207.2 170 61.2
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.4e-49 200.3 142 69.7
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 3.9e-47 192.2 207 53.1
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 8.7e-47 191.0 172 60.5
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 4.3e-46 188.7 166 60.8
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.0e-44 182.2 163 57.1
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 4.0e-44 182.2 170 54.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.2e-43 180.6 187 51.3
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.2e-40 170.6 173 53.2
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 7.9e-40 167.9 143 62.2
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.0e-34 151.0 101 74.3
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 8.4e-34 147.9 181 43.6
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.1e-32 143.3 112 67.0
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.9e-32 141.4 185 42.7
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 7.9e-32 141.4 93 76.3
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.8e-31 140.2 99 73.7
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.1e-31 138.7 202 40.1
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.7e-31 138.3 85 75.3
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-30 137.5 125 56.8
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.3e-30 136.0 97 71.1
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.8e-29 132.1 103 62.1
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 6.3e-29 131.7 89 70.8
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.2e-27 127.5 139 51.1
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.3e-26 124.0 83 68.7
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 4.6e-24 115.5 99 61.6
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 5.1e-23 112.1 85 67.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.3e-20 102.1 140 43.6
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 3.8e-18 95.9 68 66.2
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.2e-17 92.4 82 58.5
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.3e-13 80.9 62 67.7
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 8.2e-13 78.2 135 34.1
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.8e-12 77.0 76 53.9
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 5.5e-09 65.5 47 66.0
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 9.4e-09 64.7 67 47.8
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.6e-08 63.9 49 67.3
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 4.7e-08 62.4 42 69.0
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.9e-08 61.6 96 38.5
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 2.6e-06 56.6 60 51.7


User provided reference genes

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