Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26373 Striga asiatica HOM05D023227 ORTHO05D023168 5.5e-67 257.7 148 100.0
SGA_v2.0_scaffold326G48733 Striga asiatica HOM05D023227 ORTHO05D023168 7.2e-43 177.6 147 80.3
SGA_v2.0_scaffold16G07878 Striga asiatica HOM05D023227 ORTHO05D023168 9.8e-40 167.2 147 77.6
SGA_v2.0_scaffold17G07986 Striga asiatica HOM05D023227 ORTHO05D023168 1.2e-26 123.6 108 67.6
SGA_v2.0_scaffold41G15778 Striga asiatica HOM05D023227 ORTHO05D023168 8.3e-15 84.3 57 75.4
SGA_v2.0_scaffold192G40616 Striga asiatica HOM05D000100 ORTHO05D000052 1.9e-11 73.2 76 53.9
Manes.10G133680 Manihot esculenta HOM05D000100 ORTHO05D000052 4.4e-08 62.0 76 44.7
Manes.10G133662 Manihot esculenta HOM05D000100 ORTHO05D000052 9.9e-08 60.8 94 39.4
Manes.10G133692 Manihot esculenta HOM05D000100 ORTHO05D000052 9.9e-08 60.8 94 39.4
Manes.10G133701 Manihot esculenta HOM05D000100 ORTHO05D000052 9.9e-08 60.8 107 39.3
Manes.10G133707 Manihot esculenta HOM05D000100 ORTHO05D000052 9.9e-08 60.8 94 39.4
QL09p012192 Quercus lobata HOM05D000100 ORTHO05D000052 9.9e-08 60.8 92 42.4
MSTRG.27075 Avicennia marina HOM05D000100 ORTHO05D000052 1.3e-07 60.5 76 44.7
Manes.10G133650 Manihot esculenta HOM05D000100 ORTHO05D000052 1.3e-07 60.5 78 43.6
Gohir.D12G255401 Gossypium hirsutum HOM05D000100 ORTHO05D000052 1.7e-07 60.1 77 40.3
Lj1C1008T2 Lonicera japonica HOM05D000100 ORTHO05D000052 1.7e-07 60.1 86 39.5
PGR042G2288 Punica granatum HOM05D000100 ORTHO05D000052 1.7e-07 60.1 79 45.6
ECA232G2233 Erigeron canadensis HOM05D000100 ORTHO05D000052 2.9e-07 59.3 97 37.1
FvH4_1g30110 Fragaria vesca HOM05D000100 ORTHO05D000052 2.9e-07 59.3 92 39.1
FAN19G1572 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.9e-07 59.3 92 39.1
FAN28G1892 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.9e-07 59.3 92 39.1
Manes.14G020800 Manihot esculenta HOM05D000100 ORTHO05D000052 2.9e-07 59.3 92 38.0
Potri.017G150000 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.9e-07 59.3 92 39.1
Potri.017G150100 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.9e-07 59.3 95 38.9
Cfa016310 Carpinus fangiana HOM05D000100 ORTHO05D000052 3.8e-07 58.9 70 44.3
Ca_18185_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 3.8e-07 58.9 101 34.7
Ca_18186_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 3.8e-07 58.9 101 34.7
Ca_26660_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 3.8e-07 58.9 101 34.7
TPR.G36649 Trifolium pratense HOM05D000100 ORTHO05D000052 3.8e-07 58.9 103 34.0
vmacro06611 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 3.8e-07 58.9 92 39.1
Haze_00065 Corylus avellana HOM05D000100 ORTHO05D000052 4.9e-07 58.5 91 38.5
FvH4_7g30530 Fragaria vesca HOM05D000100 ORTHO05D000052 4.9e-07 58.5 92 39.1
QL09p012253 Quercus lobata HOM05D000100 ORTHO05D000052 4.9e-07 58.5 92 37.0
SalBow4G1158 Salvia bowleyana HOM05D000100 ORTHO05D000052 4.9e-07 58.5 76 43.4
CSS0024413 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 6.4e-07 58.2 86 39.5
Ca_05045_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 6.4e-07 58.2 101 33.7
Glyma.16G175300 Glycine max HOM05D000100 ORTHO05D000052 6.4e-07 58.2 92 39.1
Glyma.16G175500 Glycine max HOM05D000100 ORTHO05D000052 6.4e-07 58.2 97 35.1
Nn5g27536 Nelumbo nucifera HOM05D000100 ORTHO05D000052 6.4e-07 58.2 76 42.1
RcHm_v2.0_Chr1g0378901 Rosa chinensis HOM05D000100 ORTHO05D000052 6.4e-07 58.2 86 39.5
vmacro06608 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 6.4e-07 58.2 76 43.4
Nn1g01709 Nelumbo nucifera HOM05D000100 ORTHO05D000052 8.4e-07 57.8 92 38.0
QL02p025119 Quercus lobata HOM05D000100 ORTHO05D000052 8.4e-07 57.8 92 40.2
QL09p012282 Quercus lobata HOM05D000100 ORTHO05D000052 8.4e-07 57.8 92 37.0
Rhsim03G0192700 Rhododendron simsii HOM05D000100 ORTHO05D000052 8.4e-07 57.8 76 42.1
Glyma.09G127300 Glycine max HOM05D000100 ORTHO05D000052 1.1e-06 57.4 97 38.1
MD07G1281000 Malus domestica HOM05D000100 ORTHO05D000052 1.1e-06 57.4 76 40.8
Medtr6g033675 Medicago truncatula HOM05D000100 ORTHO05D000052 1.1e-06 57.4 101 34.7
Nn1g04241 Nelumbo nucifera HOM05D000100 ORTHO05D000052 1.1e-06 57.4 101 35.6
Psat1g096560 Pisum sativum HOM05D000100 ORTHO05D000052 1.1e-06 57.4 89 33.7
Prupe.2G303000 Prunus persica HOM05D000100 ORTHO05D000052 1.1e-06 57.4 91 38.5
Sabra17G0125000 Salix brachista HOM05D000100 ORTHO05D000052 1.1e-06 57.4 92 38.0
TPR.G36704 Trifolium pratense HOM05D000100 ORTHO05D000052 1.1e-06 57.4 95 34.7
unitig_747.g21419 Utricularia gibba HOM05D000100 ORTHO05D000052 1.1e-06 57.4 74 45.9
CiPaw.06G005100 Carya illinoinensis HOM05D000100 ORTHO05D000052 1.4e-06 57.0 101 34.7
Migut.H00709 Erythranthe guttata HOM05D000100 ORTHO05D000052 1.4e-06 57.0 121 28.9
Eucgr.A02689 Eucalyptus grandis HOM05D000100 ORTHO05D000052 1.4e-06 57.0 81 40.7
FAN01G1313 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.4e-06 57.0 76 43.4
Glyma.16G175400 Glycine max HOM05D000100 ORTHO05D000052 1.4e-06 57.0 92 38.0
Gorai.008G273300 Gossypium raimondii HOM05D000100 ORTHO05D000052 1.4e-06 57.0 77 39.0
Lsat_1_v5_gn_2_134080 Lactuca sativa HOM05D000100 ORTHO05D000052 1.4e-06 57.0 93 37.6
Psat7g069120 Pisum sativum HOM05D000100 ORTHO05D000052 1.4e-06 57.0 101 33.7
Sabra17G0125100 Salix brachista HOM05D000100 ORTHO05D000052 1.4e-06 57.0 90 40.0
TAR624G1356 Trochodendron aralioides HOM05D000100 ORTHO05D000052 1.4e-06 57.0 118 30.5
GSVIVG01028807001 Vitis vinifera HOM05D000100 ORTHO05D000052 1.4e-06 57.0 92 37.0
Actinidia08593 Actinidia chinensis HOM05D000100 ORTHO05D000052 1.9e-06 56.6 86 38.4
Ca_06026_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 1.9e-06 56.6 101 34.7
Eucgr.D00095 Eucalyptus grandis HOM05D000100 ORTHO05D000052 1.9e-06 56.6 76 42.1
Eucgr.D00097 Eucalyptus grandis HOM05D000100 ORTHO05D000052 1.9e-06 56.6 76 42.1
Eucgr.D00098 Eucalyptus grandis HOM05D000100 ORTHO05D000052 1.9e-06 56.6 76 42.1
FvH4_7g30500 Fragaria vesca HOM05D000100 ORTHO05D000052 1.9e-06 56.6 86 37.2
FAN06G1878 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.9e-06 56.6 86 37.2
FAN10G0530 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.9e-06 56.6 76 40.8
HanXRQChr11g0322331 Helianthus annuus HOM05D000100 ORTHO05D000052 1.9e-06 56.6 113 33.6
PGR102G0863 Punica granatum HOM05D000100 ORTHO05D000052 1.9e-06 56.6 72 43.1
RcHm_v2.0_Chr7g0227951 Rosa chinensis HOM05D000100 ORTHO05D000052 1.9e-06 56.6 103 33.0
vmacro06607 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 1.9e-06 56.6 92 39.1
Haze_09243 Corylus avellana HOM05D000100 ORTHO05D000052 2.4e-06 56.2 70 41.4
ECA232G2996 Erigeron canadensis HOM05D000100 ORTHO05D000052 2.4e-06 56.2 70 42.9
FAN04G0364 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.4e-06 56.2 95 34.7
FAN08G0619 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.4e-06 56.2 95 34.7
HanXRQChr14g0448931 Helianthus annuus HOM05D000100 ORTHO05D000052 2.4e-06 56.2 76 39.5
Lalb_Chr03g0035061 Lupinus albus HOM05D000100 ORTHO05D000052 2.4e-06 56.2 97 35.1
MD07G1280800 Malus domestica HOM05D000100 ORTHO05D000052 2.4e-06 56.2 76 39.5
Nn2g14894 Nelumbo nucifera HOM05D000100 ORTHO05D000052 2.4e-06 56.2 95 36.8
Potri.004G069600 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.4e-06 56.2 100 34.0
Potri.004G069800 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.4e-06 56.2 100 34.0
RcHm_v2.0_Chr1g0378931 Rosa chinensis HOM05D000100 ORTHO05D000052 2.4e-06 56.2 92 37.0
TPR.G11042 Trifolium pratense HOM05D000100 ORTHO05D000052 2.4e-06 56.2 92 35.9
CSS0048859 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 3.2e-06 55.8 76 39.5
Ca_26900_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 3.2e-06 55.8 99 35.4
Haze_00067 Corylus avellana HOM05D000100 ORTHO05D000052 3.2e-06 55.8 70 41.4
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.2e-06 55.8 86 37.2
Lsat_1_v5_gn_9_56880 Lactuca sativa HOM05D000100 ORTHO05D000052 3.2e-06 55.8 70 42.9
MD01G1210700 Malus domestica HOM05D000100 ORTHO05D000052 3.2e-06 55.8 92 35.9
Nn5g27534 Nelumbo nucifera HOM05D000100 ORTHO05D000052 3.2e-06 55.8 92 39.1
QL09p012264 Quercus lobata HOM05D000100 ORTHO05D000052 3.2e-06 55.8 92 35.9
arahy.Tifrunner.gnm1.ann1.PGZW4I Arachis hypogaea HOM05D000100 ORTHO05D000052 4.2e-06 55.5 87 34.5
arahy.Tifrunner.gnm1.ann1.YPZ0ZF Arachis hypogaea HOM05D000100 ORTHO05D000052 4.2e-06 55.5 87 34.5
Migut.F00274 Erythranthe guttata HOM05D000100 ORTHO05D000052 4.2e-06 55.5 70 45.7
FAN06G4366 Fragaria x ananassa HOM05D000100 ORTHO05D000052 4.2e-06 55.5 86 37.2
Medtr6g033625 Medicago truncatula HOM05D000100 ORTHO05D000052 4.2e-06 55.5 94 33.0
QL09p012234 Quercus lobata HOM05D000100 ORTHO05D000052 4.2e-06 55.5 92 38.0
Sp3g14870 Schrenkiella parvula HOM05D000100 ORTHO05D000052 4.2e-06 55.5 76 39.5
TPR.G36713 Trifolium pratense HOM05D000100 ORTHO05D000052 4.2e-06 55.5 126 28.6
TWI39G0931 Tripterygium wilfordii HOM05D000100 ORTHO05D000052 4.2e-06 55.5 86 37.2
BolC5t33729H Brassica oleracea HOM05D000100 ORTHO05D000052 5.4e-06 55.1 84 35.7
CANSAT35G0448 Cannabis sativa HOM05D000100 ORTHO05D000052 5.4e-06 55.1 92 34.8
Ca_13635_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 5.4e-06 55.1 93 33.3
Haze_00069 Corylus avellana HOM05D000100 ORTHO05D000052 5.4e-06 55.1 92 37.0
Eucgr.A02708 Eucalyptus grandis HOM05D000100 ORTHO05D000052 5.4e-06 55.1 70 42.9
Eucgr.B03858 Eucalyptus grandis HOM05D000100 ORTHO05D000052 5.4e-06 55.1 77 36.4
Eucgr.B03860 Eucalyptus grandis HOM05D000100 ORTHO05D000052 5.4e-06 55.1 77 37.7
FvH4_5g31920 Fragaria vesca HOM05D000100 ORTHO05D000052 5.4e-06 55.1 95 33.7
FAN06G4706 Fragaria x ananassa HOM05D000100 ORTHO05D000052 5.4e-06 55.1 91 37.4
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 5.4e-06 55.1 86 36.0
Glyma.16G175900 Glycine max HOM05D000100 ORTHO05D000052 5.4e-06 55.1 97 34.0
Gohir.A12G252800 Gossypium hirsutum HOM05D000100 ORTHO05D000052 5.4e-06 55.1 70 40.0
Gohir.A12G252900 Gossypium hirsutum HOM05D000100 ORTHO05D000052 5.4e-06 55.1 77 37.7
Gohir.D12G255375 Gossypium hirsutum HOM05D000100 ORTHO05D000052 5.4e-06 55.1 70 40.0
Gorai.008G273200 Gossypium raimondii HOM05D000100 ORTHO05D000052 5.4e-06 55.1 70 40.0
Hma1.2p1_0327F.1_g126530 Hydrangea macrophylla HOM05D000100 ORTHO05D000052 5.4e-06 55.1 74 43.2
Potri.004G070000 Populus trichocarpa HOM05D000100 ORTHO05D000052 5.4e-06 55.1 87 36.8
Potri.004G070900 Populus trichocarpa HOM05D000100 ORTHO05D000052 5.4e-06 55.1 87 36.8
Potri.004G071000 Populus trichocarpa HOM05D000100 ORTHO05D000052 5.4e-06 55.1 87 36.8
TPR.G35767 Trifolium pratense HOM05D000100 ORTHO05D000052 5.4e-06 55.1 95 34.7
Cpa.g.sc3.3 Carica papaya HOM05D000100 ORTHO05D000052 7.1e-06 54.7 86 36.0
Cfa015398 Carpinus fangiana HOM05D000100 ORTHO05D000052 7.1e-06 54.7 92 37.0
Ca_07649_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 7.1e-06 54.7 93 33.3
ECA238G2910 Erigeron canadensis HOM05D000100 ORTHO05D000052 7.1e-06 54.7 92 37.0
Glyma.16G175200 Glycine max HOM05D000100 ORTHO05D000052 7.1e-06 54.7 92 35.9
Glyma.16G175600 Glycine max HOM05D000100 ORTHO05D000052 7.1e-06 54.7 97 34.0
Lj1P1007T36 Lonicera japonica HOM05D000100 ORTHO05D000052 7.1e-06 54.7 70 41.4
Lj2g0001562 Lotus japonicus HOM05D000100 ORTHO05D000052 7.1e-06 54.7 92 35.9
Lalb_Chr03g0035041 Lupinus albus HOM05D000100 ORTHO05D000052 7.1e-06 54.7 76 40.8
MD08G1219100 Malus domestica HOM05D000100 ORTHO05D000052 7.1e-06 54.7 107 33.6
Oeu049093.1 Olea europaea HOM05D000100 ORTHO05D000052 7.1e-06 54.7 72 41.7
Prupe.1G547800 Prunus persica HOM05D000100 ORTHO05D000052 7.1e-06 54.7 79 39.2
QL09p012205 Quercus lobata HOM05D000100 ORTHO05D000052 7.1e-06 54.7 92 39.1
QL09p012238 Quercus lobata HOM05D000100 ORTHO05D000052 7.1e-06 54.7 92 35.9
RcHm_v2.0_Chr7g0227931 Rosa chinensis HOM05D000100 ORTHO05D000052 7.1e-06 54.7 103 32.0
CANSAT35G0375 Cannabis sativa HOM05D000100 ORTHO05D000052 9.2e-06 54.3 92 34.8
Ca_06024_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 9.2e-06 54.3 101 32.7
Haze_00070 Corylus avellana HOM05D000100 ORTHO05D000052 9.2e-06 54.3 92 38.0
Eucgr.A02693 Eucalyptus grandis HOM05D000100 ORTHO05D000052 9.2e-06 54.3 78 39.7
Eucgr.A02709 Eucalyptus grandis HOM05D000100 ORTHO05D000052 9.2e-06 54.3 85 38.8
HanXRQChr11g0322291 Helianthus annuus HOM05D000100 ORTHO05D000052 9.2e-06 54.3 100 35.0
MD01G1210600 Malus domestica HOM05D000100 ORTHO05D000052 9.2e-06 54.3 74 39.2
Medtr6g033660 Medicago truncatula HOM05D000100 ORTHO05D000052 9.2e-06 54.3 101 30.7
Medtr6g033725 Medicago truncatula HOM05D000100 ORTHO05D000052 9.2e-06 54.3 93 33.3
QL02p026159 Quercus lobata HOM05D000100 ORTHO05D000052 9.2e-06 54.3 106 32.1
Sp5g21070 Schrenkiella parvula HOM05D000100 ORTHO05D000052 9.2e-06 54.3 70 38.6


User provided reference genes

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