Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 1.3e-179 632.9 315 100.0
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.8e-123 446.4 375 64.0
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 3.0e-123 445.7 358 66.5
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 6.8e-123 444.5 375 63.7
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 4.4e-122 441.8 358 65.6
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 9.8e-122 440.7 354 64.1
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 2.8e-121 439.1 354 64.1
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 3.7e-121 438.7 354 63.3
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 3.1e-120 435.6 354 64.1
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 5.4e-120 434.9 356 63.8
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 9.1e-120 434.1 353 64.9
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 1.6e-119 433.3 349 64.2
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 1.6e-119 433.3 354 63.8
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.0e-118 430.6 352 64.2
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 1.3e-118 430.3 356 62.1
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.9e-118 429.1 352 63.9
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 3.8e-118 428.7 356 62.4
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 6.5e-118 427.9 437 55.6
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 3.2e-117 425.6 356 62.6
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.2e-117 425.6 352 62.2
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 9.5e-117 424.1 356 62.4
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 9.5e-117 424.1 355 62.3
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 9.5e-117 424.1 349 63.9
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 9.5e-117 424.1 358 63.1
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 2.1e-116 422.9 355 62.3
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 2.1e-116 422.9 355 62.3
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 2.1e-116 422.9 353 62.0
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 6.1e-116 421.4 356 61.8
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 8.0e-116 421.0 354 63.0
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.0e-115 420.6 354 62.7
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 1.0e-115 420.6 355 61.7
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 1.4e-115 420.2 353 62.0
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.4e-115 420.2 359 60.4
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 6.8e-115 417.9 353 61.2
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 1.5e-114 416.8 352 63.4
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 2.6e-114 416.0 355 61.1
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 3.4e-114 415.6 321 64.8
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.4e-114 415.6 353 60.9
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 4.4e-114 415.2 352 60.2
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 5.7e-114 414.8 354 62.1
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 5.7e-114 414.8 354 61.0
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 7.5e-114 414.5 349 62.2
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 9.8e-114 414.1 353 62.9
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 1.3e-113 413.7 353 61.8
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 1.3e-113 413.7 353 61.8
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 1.7e-113 413.3 353 61.8
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 1.7e-113 413.3 353 61.8
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 2.2e-113 412.9 355 61.1
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 2.8e-113 412.5 353 61.8
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 3.7e-113 412.1 361 59.6
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 4.9e-113 411.8 353 61.5
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 8.3e-113 411.0 354 60.2
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 8.3e-113 411.0 355 60.8
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.1e-112 410.6 354 62.4
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.4e-112 410.2 353 61.5
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.4e-112 410.2 354 60.7
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 1.4e-112 410.2 353 60.9
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 1.8e-112 409.8 354 61.3
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 2.4e-112 409.5 353 61.2
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 2.4e-112 409.5 354 60.5
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.1e-112 409.1 350 61.4
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 3.1e-112 409.1 354 60.7
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 3.1e-112 409.1 353 61.5
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 4.1e-112 408.7 352 60.5
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 4.1e-112 408.7 354 60.7
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 5.4e-112 408.3 350 61.7
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 9.2e-112 407.5 350 61.1
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.6e-111 406.8 353 60.9
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 1.6e-111 406.8 349 60.7
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 1.6e-111 406.8 349 60.7
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 4.5e-111 405.2 354 60.5
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 4.5e-111 405.2 353 60.3
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 5.9e-111 404.8 349 60.7
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 5.9e-111 404.8 368 58.4
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 7.8e-111 404.4 353 60.1
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 7.8e-111 404.4 355 58.9
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 1.7e-110 403.3 353 60.3
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 2.3e-110 402.9 355 60.0
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 3.8e-110 402.1 349 59.6
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.1e-109 400.6 349 59.6
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 1.5e-109 400.2 349 60.2
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 3.6e-108 395.6 355 58.6
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 6.1e-108 394.8 348 60.6
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 1.4e-107 393.7 353 57.8
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 3.0e-107 392.5 349 59.6
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 4.4e-106 388.7 357 58.8
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 4.4e-106 388.7 349 58.7
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 1.7e-105 386.7 337 59.9
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.7e-105 386.7 353 57.8
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 1.1e-104 384.0 353 58.4
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 9.2e-104 380.9 356 56.7
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 3.9e-102 375.6 374 54.0
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 5.6e-101 371.7 341 58.7
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.3e-99 366.3 356 54.8
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 5.2e-99 365.2 354 54.8
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 9.5e-93 344.4 351 55.0
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 3.4e-90 335.9 286 60.8
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.1e-88 330.9 295 60.7
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 9.2e-88 327.8 356 51.4
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 3.8e-81 305.8 352 47.4
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 4.9e-81 305.4 224 68.3
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 6.4e-81 305.1 350 48.0
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 1.2e-79 300.8 280 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.3e-73 280.8 362 44.2
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.2e-73 280.0 247 59.5
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 2.9e-73 279.6 249 56.6
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.8e-73 279.3 352 45.5
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 5.4e-72 275.4 358 45.3
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 8.7e-70 268.1 352 43.2
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.6e-68 262.7 320 45.6
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-67 260.0 354 42.7
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 4.0e-67 259.2 352 41.5
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 6.9e-67 258.5 354 42.7
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 4.5e-66 255.8 320 44.1
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-65 253.1 355 42.5
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 3.8e-65 252.7 355 40.3
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 6.4e-65 251.9 197 66.5
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-64 250.0 354 41.8
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 4.2e-64 249.2 351 42.5
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 7.1e-64 248.4 338 42.9
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-63 247.3 354 41.2
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 2.7e-63 246.5 352 41.2
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-62 244.2 352 41.2
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 3.9e-62 242.7 352 40.9
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 6.7e-62 241.9 355 40.6
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 6.7e-62 241.9 352 40.6
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 7.4e-61 238.4 352 40.3
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-55 221.1 353 37.1
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 3.0e-54 216.5 352 37.2
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 6.5e-49 198.7 279 39.8
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 8.4e-49 198.4 174 59.2
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.2e-47 194.5 150 67.3
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.1e-45 188.0 178 60.7
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 1.5e-45 187.6 174 60.3
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 5.3e-43 179.1 138 65.2
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 2.5e-40 170.2 238 41.2
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 7.2e-40 168.7 129 63.6
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 3.9e-38 162.9 173 51.4
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 1.9e-37 160.6 134 61.9
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 2.5e-37 160.2 175 45.7
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 1.3e-36 157.9 115 66.1
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 4.8e-36 156.0 192 43.2
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 2.2e-33 147.1 238 38.2
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 8.8e-30 135.2 325 33.2
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 1.1e-29 134.8 147 48.3
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 1.5e-26 124.4 73 75.3
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.4e-19 101.3 361 29.6
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 1.2e-18 98.2 334 28.1
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.0e-17 95.1 62 77.4
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 6.5e-17 92.4 74 60.8
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 6.5e-17 92.4 58 63.8
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.9e-16 90.9 351 27.9
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.0e-14 83.6 54 79.6
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 7.5e-13 79.0 48 72.9
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.3e-12 78.2 307 26.4
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.7e-12 77.8 88 50.0
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.8e-12 76.3 126 38.9
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 8.2e-12 75.5 334 25.7
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 9.1e-11 72.0 54 64.8
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 2.7e-10 70.5 44 72.7
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 1.0e-09 68.6 44 72.7
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 1.0e-09 68.6 44 72.7
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 1.1e-08 65.1 51 64.7
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 3.6e-07 60.1 332 26.5
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 4.0e-06 56.6 98 31.6


User provided reference genes

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