Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 1.3e-222 776.2 406 100.0
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 9.3e-117 424.5 402 61.9
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 5.9e-103 378.6 279 71.7
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.2e-100 370.9 394 56.3
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 1.2e-95 354.4 384 54.9
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 1.4e-88 330.9 456 49.8
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.4e-88 330.9 443 50.8
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 7.0e-88 328.6 445 50.3
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 2.9e-86 323.2 436 48.4
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 5.0e-86 322.4 425 50.1
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 2.7e-84 316.6 421 49.2
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 8.0e-84 315.1 442 48.0
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.4e-83 314.3 433 48.7
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 5.2e-83 312.4 442 48.0
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 2.0e-82 310.5 456 45.8
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 8.3e-81 305.1 425 48.5
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.8e-80 303.9 421 48.5
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 2.0e-79 300.4 409 49.6
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 7.7e-79 298.5 430 47.0
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.7e-78 297.4 440 45.9
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 3.8e-78 296.2 462 44.4
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 6.5e-78 295.4 419 48.4
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 3.2e-77 293.1 425 47.3
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.2e-77 293.1 331 53.8
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 5.5e-77 292.4 440 46.8
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 2.7e-76 290.0 328 50.9
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 1.0e-75 288.1 436 45.4
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 1.4e-75 287.7 431 44.3
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.8e-75 287.3 394 45.2
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.3e-75 287.0 433 45.3
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 6.8e-75 285.4 461 44.3
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 6.8e-75 285.4 417 43.9
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 1.2e-74 284.6 433 48.0
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.2e-74 284.6 433 45.3
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 3.4e-74 283.1 442 44.1
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 9.8e-74 281.6 442 41.6
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 2.8e-73 280.0 449 42.8
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 3.7e-73 279.6 444 44.6
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.7e-73 279.6 433 45.0
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 4.8e-73 279.3 443 43.3
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 8.3e-73 278.5 413 46.0
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.1e-72 278.1 452 44.2
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 2.4e-72 276.9 296 55.1
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 5.4e-72 275.8 447 44.3
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 7.0e-72 275.4 280 56.8
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.7e-71 273.5 431 45.2
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 2.7e-71 273.5 431 45.2
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 1.3e-70 271.2 458 42.6
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 2.3e-70 270.4 401 43.4
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 5.0e-70 269.2 413 46.0
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 6.6e-70 268.9 461 43.0
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 1.5e-69 267.7 376 44.1
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 4.2e-69 266.2 303 50.8
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 2.8e-68 263.5 435 43.4
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 3.6e-68 263.1 458 41.5
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.0e-67 261.5 438 43.6
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.3e-67 260.4 426 42.7
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 2.3e-67 260.4 400 45.2
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 3.0e-67 260.0 429 41.0
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 4.0e-67 259.6 282 52.8
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.2e-66 258.1 531 39.4
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 2.0e-66 257.3 450 42.0
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 3.4e-66 256.5 441 40.8
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 3.4e-66 256.5 418 43.5
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.3e-65 254.6 423 42.6
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 2.8e-65 253.4 386 45.9
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.8e-65 253.4 438 39.3
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 3.7e-65 253.1 357 47.6
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.1e-64 251.5 454 40.7
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 1.8e-64 250.8 348 47.1
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.2e-63 248.1 243 57.2
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 1.6e-63 247.7 256 54.3
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 3.5e-63 246.5 376 42.3
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 3.5e-63 246.5 348 45.1
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 5.9e-63 245.7 417 42.4
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 7.8e-63 245.4 422 41.9
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.3e-62 244.6 417 41.2
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 5.6e-61 239.2 378 45.5
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 5.6e-61 239.2 426 40.8
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 4.7e-60 236.1 412 41.0
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.4e-59 234.6 443 42.9
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.2e-58 231.5 411 41.6
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.5e-58 231.1 424 41.5
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 2.0e-58 230.7 412 40.5
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-57 228.0 413 42.6
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.7e-57 227.6 280 50.4
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 2.9e-57 226.9 423 42.6
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 6.4e-57 225.7 422 42.9
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.1e-56 224.9 442 40.5
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 1.4e-56 224.6 350 42.9
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 4.1e-56 223.0 340 42.9
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 7.0e-56 222.2 340 42.9
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 9.2e-56 221.9 431 40.8
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.6e-55 221.1 417 38.8
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 8.6e-54 215.3 421 40.6
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 8.6e-54 215.3 422 41.5
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 5.6e-53 212.6 238 52.9
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 9.5e-53 211.8 426 39.2
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 4.7e-52 209.5 222 53.6
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.2e-50 204.9 438 38.8
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 3.4e-50 203.4 412 39.8
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.7e-49 201.1 413 39.2
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 2.2e-49 200.7 302 44.7
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 8.3e-49 198.7 413 37.3
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.4e-48 198.0 347 39.8
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 4.1e-48 196.4 412 39.1
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 9.2e-48 195.3 232 49.6
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 3.3e-45 186.8 419 35.6
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 9.5e-45 185.3 233 50.2
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 9.5e-45 185.3 340 39.7
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.1e-43 180.3 231 48.1
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.5e-42 177.9 255 48.2
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.5e-42 177.9 410 37.1
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 2.3e-38 164.1 400 33.5
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 8.6e-38 162.2 323 37.8
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 5.6e-37 159.5 246 40.7
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 6.2e-36 156.0 221 46.6
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 2.9e-33 147.1 291 37.5
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.8e-31 139.0 399 35.8
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.1e-29 135.2 260 35.0
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 1.3e-22 111.7 140 46.4
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.1e-20 104.4 160 45.6
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.4e-18 97.1 293 35.8
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 1.6e-15 88.2 85 52.9
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 1.6e-12 78.2 196 30.1
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 6.2e-12 76.3 164 37.8
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 5.3e-11 73.2 96 49.0
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 1.5e-10 71.6 80 48.8
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.5e-09 66.2 115 42.6
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 1.4e-08 65.1 149 37.6
Hund06385 Selenicereus undatus HOM05D004981 ORTHO05D005635 1.9e-08 64.7 226 31.0
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 3.2e-08 63.9 91 41.8
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 5.5e-08 63.2 151 30.5
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.5e-07 60.5 139 34.5
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 6.0e-07 59.7 67 49.3
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 6.0e-07 59.7 145 36.6
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 7.9e-07 59.3 222 30.2


User provided reference genes

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