Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 1.1e-175 619.8 305 100.0
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 5.0e-107 391.7 270 71.9
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.3e-102 377.1 273 71.4
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 1.6e-100 370.2 246 74.8
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 1.0e-99 367.5 243 74.5
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 2.3e-99 366.3 236 75.0
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 3.0e-99 365.9 271 69.7
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 3.9e-99 365.5 241 75.1
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 3.3e-98 362.5 254 71.3
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 5.6e-98 361.7 238 74.8
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 8.1e-97 357.8 252 71.8
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 1.1e-96 357.5 227 76.2
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 1.4e-96 357.1 244 70.9
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 3.1e-96 355.9 258 68.6
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 3.1e-96 355.9 240 71.2
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 5.2e-96 355.1 225 76.4
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 1.2e-95 354.0 226 76.5
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 2.6e-95 352.8 265 67.9
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 5.8e-95 351.7 220 77.7
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 7.5e-95 351.3 264 67.8
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 7.5e-95 351.3 268 64.2
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 1.3e-94 350.5 227 74.9
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.3e-94 350.5 226 75.2
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 2.9e-94 349.4 249 71.5
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 4.9e-94 348.6 221 76.9
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 6.4e-94 348.2 219 77.6
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 6.4e-94 348.2 267 68.2
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 1.1e-93 347.4 221 76.0
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.4e-93 347.1 226 74.3
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 1.4e-93 347.1 224 75.9
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.9e-93 346.7 240 71.7
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 1.9e-93 346.7 271 66.1
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 2.4e-93 346.3 240 71.7
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 2.4e-93 346.3 226 74.8
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 2.1e-92 343.2 238 69.7
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 4.6e-92 342.0 271 64.6
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 4.6e-92 342.0 229 72.5
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 6.0e-92 341.7 274 64.2
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 7.8e-92 341.3 270 65.6
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.0e-91 340.9 259 68.7
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 1.0e-91 340.9 229 72.1
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 1.3e-91 340.5 262 67.9
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 3.9e-91 339.0 229 72.5
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 5.1e-91 338.6 223 74.9
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 2.5e-90 336.3 237 72.6
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 3.3e-90 335.9 218 74.8
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 7.3e-90 334.7 299 59.2
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 9.5e-90 334.3 219 74.0
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.2e-89 334.0 227 72.7
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 1.2e-89 334.0 224 72.8
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 1.2e-89 334.0 232 71.6
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 1.6e-89 333.6 253 66.0
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 1.6e-89 333.6 256 65.2
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 8.1e-89 331.3 237 69.2
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 1.4e-88 330.5 250 65.6
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 4.4e-87 325.5 272 63.2
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 9.9e-87 324.3 234 68.4
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 9.9e-87 324.3 234 68.4
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 1.3e-86 323.9 225 71.1
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 1.7e-86 323.6 220 71.8
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 1.7e-86 323.6 217 72.4
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 2.2e-86 323.2 220 72.7
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 4.9e-86 322.0 221 72.4
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 1.1e-85 320.9 234 67.9
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 1.9e-85 320.1 220 70.9
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 7.1e-85 318.2 220 70.5
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 9.2e-85 317.8 230 67.4
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 2.7e-84 316.2 243 67.1
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.7e-84 316.2 232 66.8
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 4.6e-84 315.5 220 70.5
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 6.0e-84 315.1 234 66.7
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 7.8e-84 314.7 241 62.7
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 6.6e-83 311.6 229 67.7
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 7.3e-82 308.1 184 78.8
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 1.6e-81 307.0 242 64.5
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 2.8e-81 306.2 212 72.6
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 3.6e-81 305.8 280 58.2
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 6.2e-81 305.1 219 69.9
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 8.1e-81 304.7 213 71.4
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 1.8e-80 303.5 224 67.9
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 7.6e-79 298.1 217 68.7
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.7e-78 297.0 187 74.9
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 7.1e-77 291.6 246 59.3
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 3.5e-76 289.3 226 64.6
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 4.6e-76 288.9 226 66.4
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 3.9e-75 285.8 261 60.5
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 5.1e-75 285.4 213 65.3
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 8.7e-75 284.6 209 69.4
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.9e-74 283.5 226 65.5
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 4.3e-74 282.3 190 71.6
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.3e-73 280.8 170 76.5
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 3.1e-72 276.2 188 75.5
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 5.3e-72 275.4 263 56.7
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 2.9e-70 269.6 300 51.0
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 5.4e-69 265.4 226 58.4
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 1.1e-66 257.7 238 58.4
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 5.6e-66 255.4 182 69.8
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 2.4e-64 250.0 152 80.3
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 9.0e-64 248.1 192 62.5
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 5.8e-63 245.4 151 78.8
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.4e-61 240.7 173 70.5
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 4.9e-54 215.7 145 73.8
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 1.9e-53 213.8 206 52.4
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 5.5e-53 212.2 215 57.2
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 2.7e-52 209.9 161 62.7
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 6.7e-51 205.3 150 66.7
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 1.1e-50 204.5 184 54.9
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 7.4e-50 201.8 183 51.9
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 4.8e-49 199.1 121 77.7
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 1.3e-41 174.5 237 43.9
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 1.4e-40 171.0 183 48.6
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.2e-36 157.9 81 91.4
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.4e-35 154.5 81 90.1
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 7.4e-34 148.7 121 61.2
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 6.3e-33 145.6 76 90.8
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 3.0e-27 126.7 69 81.2
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 3.9e-27 126.3 183 39.3
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.3e-25 121.3 120 43.3
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.6e-23 113.6 58 89.7
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 1.0e-22 111.7 89 62.9
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 4.2e-21 106.3 135 47.4
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 2.7e-15 87.0 55 78.2
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 5.9e-15 85.9 45 84.4
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 5.9e-15 85.9 58 70.7
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 5.9e-15 85.9 109 51.4
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 5.5e-13 79.3 44 79.5
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 1.2e-10 71.6 72 52.8


User provided reference genes

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