Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 0.0e+00 1600.9 794 100.0
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 0.0e+00 1142.9 789 72.6
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 0.0e+00 1137.9 793 72.4
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 0.0e+00 1119.0 789 70.7
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.4e-297 1026.2 790 65.7
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.4e-296 1021.1 788 64.8
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.7e-292 1009.2 788 65.1
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 2.0e-288 995.7 765 65.6
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 2.2e-287 992.3 787 62.9
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.1e-286 989.9 790 63.0
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 7.1e-286 987.3 790 62.9
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 2.0e-280 969.1 788 62.9
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 5.1e-276 954.5 794 61.6
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.2e-274 949.9 789 61.5
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 3.5e-269 931.8 785 59.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.9e-267 926.0 831 57.9
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.6e-266 922.9 786 60.3
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 2.1e-266 922.5 787 59.7
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 2.1e-266 922.5 787 60.7
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 6.2e-266 921.0 792 58.7
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 4.0e-265 918.3 800 58.4
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.0e-265 918.3 791 60.2
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 2.0e-264 916.0 793 57.8
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.0e-264 916.0 786 59.7
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.8e-264 914.4 789 59.3
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.3e-263 913.3 789 59.3
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.8e-263 911.8 786 59.4
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 4.9e-263 911.4 790 58.5
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 6.4e-263 911.0 790 59.2
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.9e-262 909.4 794 59.7
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 4.2e-262 908.3 800 58.6
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 4.2e-262 908.3 786 58.1
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 7.1e-262 907.5 800 58.1
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 9.3e-262 907.1 800 59.0
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 9.3e-262 907.1 789 59.3
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.2e-261 906.7 786 59.0
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 3.5e-261 905.2 800 58.6
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.0e-260 903.7 788 58.1
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 1.0e-260 903.7 827 56.6
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 1.1e-259 900.2 786 58.1
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 2.5e-259 899.0 791 58.9
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 3.3e-259 898.7 788 57.7
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 4.3e-259 898.3 786 58.5
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 5.6e-259 897.9 788 57.5
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.3e-258 896.7 793 58.6
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.4e-257 893.3 786 58.1
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.2e-256 890.2 788 59.5
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.5e-256 888.3 764 59.8
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 5.8e-256 887.9 786 57.1
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 4.9e-255 884.8 787 57.7
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 8.4e-255 884.0 790 57.8
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.1e-254 883.6 788 57.1
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.9e-254 882.9 794 57.3
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 5.5e-254 881.3 811 58.0
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 7.1e-254 880.9 786 58.9
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.1e-253 879.4 792 56.4
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.0e-252 877.1 786 57.1
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 6.7e-252 874.4 786 56.9
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 1.5e-251 873.2 788 57.6
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.5e-251 873.2 786 57.4
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 4.3e-251 871.7 796 56.8
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 9.6e-251 870.5 796 56.0
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.6e-250 869.8 792 55.8
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.0e-247 860.5 794 55.9
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 5.5e-246 854.7 790 55.4
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 9.3e-246 854.0 794 55.7
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.9e-243 846.3 802 55.5
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-238 830.5 793 54.0
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.5e-235 820.1 771 54.5
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.3e-234 817.0 792 54.0
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 4.8e-234 815.1 737 56.0
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 2.4e-233 812.8 713 58.3
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 4.5e-232 808.5 770 53.9
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.3e-226 790.4 790 53.8
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.2e-222 775.4 703 58.2
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 5.5e-222 775.0 883 50.7
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.7e-221 771.9 681 59.2
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.7e-219 764.2 814 51.5
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.2e-215 753.1 792 51.1
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.0e-212 744.2 798 49.0
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 2.3e-212 743.0 796 51.4
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.6e-211 739.6 735 53.9
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 5.7e-211 738.4 766 50.9
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 2.4e-209 733.0 672 55.7
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 4.1e-209 732.3 492 71.7
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.0e-207 727.6 680 56.6
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.1e-205 719.9 670 55.4
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.8e-202 709.5 672 53.4
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.4e-201 706.4 823 49.2
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.1e-193 679.1 590 59.7
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 2.8e-189 666.4 496 65.5
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.2e-188 662.1 680 50.0
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.8e-185 653.7 518 63.7
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.2e-181 641.0 791 46.3
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 8.9e-180 634.8 700 48.9
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 4.4e-179 632.5 682 50.1
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 7.8e-176 621.7 458 65.7
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 5.1e-159 565.8 803 42.0
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 4.4e-155 552.7 809 40.4
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 8.4e-146 521.9 663 42.1
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.4e-140 504.6 382 65.4
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.3e-138 498.0 587 49.2
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 2.2e-138 497.3 346 72.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 3.2e-137 493.4 489 53.8
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.9e-128 462.2 646 39.6
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 6.9e-124 449.1 510 47.6
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.1e-116 425.2 909 32.8
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.1e-108 398.7 530 40.6
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.0e-106 389.8 470 44.5
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.7e-96 356.7 460 43.0
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 7.0e-92 342.8 353 50.1
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.0e-87 327.4 227 67.0
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.2e-62 245.7 188 66.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.5e-62 245.4 303 47.9
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.3e-57 227.6 132 73.5
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.9e-49 201.8 144 68.1
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.2e-48 199.1 126 74.6
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 8.1e-48 196.4 220 47.7
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 1.1e-47 196.1 182 50.0
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.8e-47 195.3 439 33.0
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.1e-44 186.0 221 41.6
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.6e-43 182.2 126 71.4
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.4e-36 159.1 257 42.8
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.5e-33 148.3 108 66.7
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 6.9e-31 140.2 101 63.4
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.2e-27 129.4 118 59.3
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 2.1e-27 128.6 131 51.9
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.9e-26 124.4 93 55.9
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.6e-19 102.4 75 65.3
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 8.7e-18 96.7 105 46.7
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 6.9e-15 87.0 72 56.9
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 2.9e-13 81.6 84 53.6
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 4.2e-12 77.8 182 33.0
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 1.3e-10 72.8 86 44.2
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 3.9e-10 71.2 60 51.7
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 8.7e-10 70.1 60 60.0
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 1.1e-09 69.7 44 70.5
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 2.5e-09 68.6 44 65.9


User provided reference genes

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