Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 2.3e-213 745.3 388 100.0
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.3e-187 659.8 383 87.7
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 8.2e-187 657.1 388 87.6
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.1e-186 656.8 388 86.1
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.9e-184 648.7 388 85.3
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 2.1e-182 642.5 388 85.3
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.9e-180 636.0 388 84.0
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 2.2e-179 632.5 388 82.5
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 4.8e-179 631.3 385 83.1
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 6.3e-179 630.9 385 82.6
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 9.1e-178 627.1 385 82.3
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 1.1e-175 620.2 385 80.8
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.5e-175 617.8 388 81.7
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 4.7e-174 614.8 387 79.8
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.8e-173 612.8 388 81.2
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.0e-172 609.4 384 79.2
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.7e-171 606.3 388 80.7
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 9.1e-170 600.5 385 79.2
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 5.9e-169 597.8 384 78.4
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 7.7e-169 597.4 388 77.3
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 2.5e-167 592.4 388 77.3
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.2e-167 591.7 388 77.1
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.6e-166 588.6 388 76.3
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 6.1e-166 587.8 388 77.1
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 8.0e-166 587.4 385 77.1
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.8e-165 586.3 384 77.6
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 2.3e-165 585.9 388 77.8
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.3e-163 580.1 388 75.8
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.8e-162 576.2 381 76.9
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 5.3e-162 574.7 388 76.5
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.2e-161 573.5 388 75.5
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 2.6e-161 572.4 385 76.4
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.2e-160 569.3 385 73.5
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.8e-160 568.5 388 75.3
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.8e-160 568.5 388 75.5
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 8.5e-160 567.4 388 74.2
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.9e-159 566.2 385 74.8
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 5.5e-159 564.7 383 73.4
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 7.2e-159 564.3 388 74.2
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.2e-158 563.5 388 76.0
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 2.1e-158 562.8 383 73.4
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.1e-158 562.8 388 74.0
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 4.0e-157 558.5 350 81.1
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 1.5e-156 556.6 385 74.0
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.4e-156 555.1 388 74.5
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 4.4e-156 555.1 388 74.5
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 7.5e-156 554.3 390 72.3
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.7e-155 553.1 383 73.9
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 2.8e-155 552.4 384 73.2
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.8e-155 552.4 386 72.0
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 6.3e-155 551.2 406 71.7
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.8e-154 549.7 383 72.6
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 72.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 3.1e-154 548.9 389 72.2
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.6e-153 546.6 388 72.7
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 7.7e-153 544.3 386 72.3
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 7.7e-153 544.3 384 72.4
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.2e-152 542.7 384 73.2
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.9e-152 542.3 384 71.9
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 5.0e-152 541.6 389 71.5
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 6.5e-152 541.2 383 72.3
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.9e-151 539.7 393 71.2
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.5e-151 539.3 389 72.0
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 5.5e-151 538.1 387 70.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 9.4e-151 537.3 388 71.4
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.2e-150 537.0 388 71.1
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.6e-150 536.6 383 71.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 2.1e-150 536.2 389 70.7
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.0e-149 531.9 395 70.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 5.2e-149 531.6 385 71.4
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.2e-149 531.6 383 71.8
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.5e-148 530.0 385 70.6
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.0e-148 529.6 388 70.6
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 3.4e-148 528.9 388 70.6
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 9.8e-148 527.3 384 70.3
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 2.4e-146 522.7 392 70.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.0e-146 521.2 420 66.0
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 9.1e-146 520.8 420 66.2
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-145 520.4 409 67.2
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.3e-144 516.9 348 75.9
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.7e-144 516.5 420 65.7
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.0e-144 515.0 420 65.5
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.9e-143 513.1 349 73.9
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.2e-142 510.4 388 66.5
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 3.6e-142 508.8 348 75.6
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.0e-141 507.3 341 76.2
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.0e-141 507.3 386 69.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 3.0e-141 505.8 387 69.3
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 3.0e-141 505.8 385 69.9
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.2e-141 505.0 383 67.4
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 6.8e-141 504.6 385 69.4
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 7.5e-140 501.1 386 69.2
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 7.5e-140 501.1 386 69.2
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 7.5e-140 501.1 385 69.1
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.8e-139 499.2 388 66.5
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.7e-139 498.8 388 66.5
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.1e-138 497.3 385 68.6
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 4.1e-138 495.4 385 68.6
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 7.0e-138 494.6 385 67.8
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.2e-137 493.8 385 68.1
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 2.0e-137 493.0 385 67.8
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 7.8e-137 491.1 383 65.3
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.0e-136 490.7 384 68.2
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 7.3e-135 484.6 386 66.3
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.1e-134 483.0 385 67.3
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.0e-133 480.7 385 67.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.0e-133 480.7 386 67.4
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.0e-133 480.7 388 66.0
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.4e-130 470.3 385 65.5
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.0e-128 464.2 342 68.7
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.1e-127 460.7 390 64.6
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.9e-127 459.9 402 62.2
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 3.6e-126 455.7 382 64.4
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 8.9e-125 451.1 385 64.2
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 8.3e-123 444.5 397 61.7
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.3e-120 437.2 394 59.1
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.7e-120 436.8 389 59.6
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.4e-117 427.2 388 57.7
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 8.9e-117 424.5 377 59.9
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 2.0e-116 423.3 399 57.1
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.7e-112 410.2 388 58.0
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.1e-105 386.7 388 56.2
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.5e-100 370.5 297 61.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 7.6e-100 368.2 271 70.5
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 2.0e-92 343.6 419 48.9
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.9e-90 337.0 226 74.3
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 7.9e-89 331.6 437 45.1
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 8.4e-83 311.6 296 59.5
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.5e-81 306.2 368 47.6
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.0e-80 304.7 265 59.6
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.6e-73 280.8 386 43.5
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.4e-61 240.4 463 35.6
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 3.1e-61 240.0 164 75.6
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.3e-56 223.8 142 82.4
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 4.2e-50 203.0 245 46.5
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.4e-47 193.0 152 71.1
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.3e-46 191.4 178 60.1
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.5e-42 177.2 128 71.1
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.9e-34 151.0 392 31.9
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.7e-33 146.4 149 56.4
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-30 138.3 155 53.5
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 4.9e-30 136.3 177 46.9
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 8.3e-30 135.6 89 75.3
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 2.7e-28 130.6 138 56.5
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.9e-28 129.4 79 77.2
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 9.5e-26 122.1 120 56.7
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 2.1e-25 120.9 108 55.6
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-22 111.3 82 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.3e-22 109.0 213 36.2
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 5.4e-21 106.3 126 54.0
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.5e-20 103.6 126 53.2
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.0e-19 99.8 82 58.5
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 7.3e-18 95.9 125 50.4
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 4.0e-16 90.1 69 66.7
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 7.5e-15 85.9 106 50.0
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 2.2e-14 84.3 82 52.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 8.3e-14 82.4 78 61.5
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 1.2e-12 78.6 42 92.9
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 7.8e-12 75.9 51 66.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 3.9e-11 73.6 99 46.5
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 5.6e-10 69.7 51 60.8
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-08 65.5 100 44.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.8e-08 64.7 36 88.9
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 5.2e-08 63.2 38 84.2
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 2.0e-07 61.2 38 81.6
TPR.G33192 Trifolium pratense HOM05D004239 ORTHO05D410682 1.7e-06 58.2 86 43.0
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 8.3e-06 55.8 81 44.4


User provided reference genes

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