Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G26073 Striga asiatica HOM05D006834 ORTHO05D008623 1.2e-79 299.7 146 100.0
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 2.4e-38 162.5 131 68.7
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 2.9e-20 102.4 125 49.6
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 3.2e-19 99.0 93 61.3
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 6.1e-10 68.2 92 44.6
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 6.1e-10 68.2 100 42.0
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 8.0e-10 67.8 102 39.2
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.0e-09 67.4 100 38.0
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 2.3e-09 66.2 98 41.8
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 4.0e-09 65.5 81 43.2
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 5.2e-09 65.1 85 45.9
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 2.6e-08 62.8 89 42.7
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 5.7e-08 61.6 71 49.3
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 5.7e-08 61.6 97 38.1
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 7.5e-08 61.2 120 35.0
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 1.7e-07 60.1 94 40.4
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 2.2e-07 59.7 83 43.4
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 4.8e-07 58.5 61 44.3
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 4.8e-07 58.5 61 44.3
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 4.8e-07 58.5 45 55.6
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 6.3e-07 58.2 77 40.3
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 8.2e-07 57.8 82 37.8
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 8.2e-07 57.8 45 46.7
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 1.4e-06 57.0 45 48.9
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.4e-06 57.0 45 46.7
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 1.4e-06 57.0 89 34.8
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 1.8e-06 56.6 45 46.7
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 1.8e-06 56.6 45 46.7
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 1.8e-06 56.6 55 45.5
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 2.4e-06 56.2 80 41.2
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.1e-06 55.8 45 44.4
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.1e-06 55.8 45 44.4
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 3.1e-06 55.8 55 52.7
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 3.1e-06 55.8 56 50.0
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 5.3e-06 55.1 58 48.3
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 5.3e-06 55.1 45 44.4
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 5.3e-06 55.1 40 47.5
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 5.3e-06 55.1 45 44.4
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 5.3e-06 55.1 55 43.6
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 5.3e-06 55.1 54 51.9
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 7.0e-06 54.7 73 43.8
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 7.0e-06 54.7 40 47.5
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 9.1e-06 54.3 45 44.4
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 9.1e-06 54.3 45 46.7
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 9.1e-06 54.3 59 40.7


User provided reference genes

Program Settings