Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 7.1e-201 703.7 363 100.0
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 9.0e-95 351.3 387 59.2
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 8.5e-69 265.0 389 48.8
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.2e-68 261.9 386 50.5
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.0e-66 258.1 380 50.3
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.7e-66 255.4 376 50.5
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 4.8e-64 249.2 362 48.9
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.5e-62 242.7 393 47.6
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 2.2e-61 240.4 291 54.3
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 3.8e-61 239.6 300 52.0
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 6.5e-61 238.8 300 52.0
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.1e-60 238.0 372 47.3
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.4e-60 237.7 379 46.2
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-60 236.9 379 47.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.5e-60 236.9 379 47.2
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-60 236.1 379 47.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 9.4e-60 235.0 300 51.7
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 2.7e-59 233.4 382 46.6
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 6.1e-59 232.3 379 46.4
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.4e-58 231.1 376 46.0
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 5.1e-58 229.2 372 48.4
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 5.1e-58 229.2 381 47.8
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 5.1e-58 229.2 374 46.3
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 6.7e-58 228.8 383 47.0
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 8.8e-58 228.4 381 44.9
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.5e-57 227.6 385 45.5
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.4e-57 225.3 370 45.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.3e-56 224.6 378 45.0
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 2.2e-56 223.8 378 44.4
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.8e-56 223.4 376 45.5
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.8e-56 223.4 370 46.5
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.4e-55 221.1 370 44.1
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.4e-55 221.1 388 44.8
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.4e-55 221.1 379 46.4
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.1e-55 219.9 297 50.8
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 7.0e-55 218.8 377 45.4
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 9.1e-55 218.4 375 46.1
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.2e-54 218.0 376 44.1
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.0e-54 217.2 341 48.1
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 5.9e-54 215.7 375 44.8
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.7e-54 215.3 395 45.1
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.0e-53 214.9 377 44.3
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.7e-53 214.2 376 43.4
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.2e-53 213.8 395 44.8
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 3.8e-53 213.0 435 39.5
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.8e-53 213.0 386 41.2
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 6.5e-53 212.2 391 43.7
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 8.5e-53 211.8 397 42.8
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 8.5e-53 211.8 393 43.8
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 1.4e-52 211.1 294 49.3
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.5e-52 210.3 380 43.2
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 3.2e-52 209.9 384 44.3
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 5.5e-52 209.1 432 40.5
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 7.2e-52 208.8 387 43.9
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 9.4e-52 208.4 395 42.3
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 9.4e-52 208.4 373 45.0
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 9.4e-52 208.4 391 42.2
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 9.4e-52 208.4 389 42.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.1e-51 207.2 370 44.3
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 2.1e-51 207.2 390 42.6
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 4.7e-51 206.1 394 42.6
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 6.1e-51 205.7 425 40.0
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 6.1e-51 205.7 374 43.0
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.0e-50 204.9 427 39.8
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.0e-50 204.9 393 41.7
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 2.3e-50 203.8 375 42.1
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 3.0e-50 203.4 435 38.6
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 3.0e-50 203.4 382 42.1
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 5.2e-50 202.6 389 42.4
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 6.7e-50 202.2 397 39.8
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 8.8e-50 201.8 382 42.9
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.1e-49 201.4 381 42.8
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.5e-49 201.1 431 39.7
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.0e-49 200.7 370 43.2
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 2.0e-49 200.7 379 44.6
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.0e-49 200.7 379 44.6
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 2.0e-49 200.7 415 39.8
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 4.4e-49 199.5 425 39.8
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 7.4e-49 198.7 376 41.8
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.3e-48 198.0 365 43.8
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.7e-48 197.6 383 42.0
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 2.8e-48 196.8 393 40.5
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 4.8e-48 196.1 404 41.6
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 4.8e-48 196.1 378 39.4
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.1e-47 194.9 368 41.8
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 1.4e-47 194.5 346 41.6
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.8e-47 194.1 436 36.9
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.8e-47 194.1 384 42.2
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.4e-47 193.7 405 41.0
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 3.1e-47 193.4 383 41.8
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 5.3e-47 192.6 373 41.6
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.2e-46 191.4 382 41.6
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-46 190.7 384 42.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 7.7e-46 188.7 383 41.5
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.9e-45 186.8 344 40.7
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 2.9e-45 186.8 309 45.0
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 8.5e-45 185.3 471 35.9
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.9e-44 184.1 385 39.5
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 4.2e-44 183.0 468 35.7
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 9.4e-44 181.8 341 42.8
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 4.7e-43 179.5 380 40.5
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.2e-41 174.9 340 40.6
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.5e-41 174.5 376 41.5
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 2.6e-41 173.7 359 41.8
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.7e-40 171.0 299 42.1
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 6.3e-40 169.1 296 44.3
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 6.3e-40 169.1 430 36.3
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 8.3e-40 168.7 293 42.3
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.4e-39 167.9 379 39.3
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.2e-38 164.9 434 35.5
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.9e-36 157.5 283 40.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 2.5e-36 157.1 253 45.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 4.2e-36 156.4 256 46.1
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 2.7e-35 153.7 407 36.6
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.0e-34 150.2 411 36.5
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 8.8e-34 148.7 384 36.2
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.2e-33 148.3 340 37.9
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 5.4e-31 139.4 328 36.3
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.2e-30 138.3 281 39.9
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 3.5e-30 136.7 291 37.5
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 5.0e-29 132.9 395 33.4
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.5e-25 121.3 270 38.1
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.5e-25 119.0 302 35.1
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.7e-24 117.9 452 31.0
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.7e-24 117.9 370 34.3
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.6e-22 111.3 134 54.5
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.3e-21 107.5 343 34.7
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 4.3e-20 103.2 184 39.7
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.2e-17 95.1 216 36.6
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 7.5e-17 92.4 185 37.3
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.5e-12 77.4 81 56.8
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 6.2e-11 72.8 102 49.0
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 1.4e-10 71.6 55 70.9
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.9e-08 63.9 66 54.5
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 3.7e-08 63.5 357 29.1
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 4.9e-08 63.2 85 44.7
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 6.4e-08 62.8 242 29.8


User provided reference genes

Program Settings