Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 9.7e-88 326.6 148 100.0
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.4e-70 269.6 146 82.9
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 2.6e-69 265.4 148 79.1
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.0e-68 263.5 149 79.2
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.0e-68 263.5 153 77.8
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.7e-68 262.7 146 84.2
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 2.9e-68 261.9 150 78.0
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.9e-67 259.2 148 77.7
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 7.2e-67 257.3 154 76.6
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 2.7e-66 255.4 152 79.6
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.0e-65 253.4 150 76.7
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.8e-65 252.7 154 76.6
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 2.3e-65 252.3 154 76.6
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 9.7e-64 246.9 141 77.3
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.7e-63 246.1 148 75.7
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 1.7e-63 246.1 147 74.8
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.7e-63 246.1 152 73.7
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.2e-63 245.7 145 74.5
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 6.3e-63 244.2 158 70.3
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.4e-62 243.0 153 71.9
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 5.3e-62 241.1 153 71.2
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 9.1e-62 240.4 148 73.0
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 9.1e-62 240.4 150 74.0
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.6e-61 239.6 148 73.0
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 2.6e-61 238.8 166 66.9
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.5e-61 238.0 148 71.6
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 5.9e-61 237.7 148 71.6
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 5.9e-61 237.7 139 76.3
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 1.0e-60 236.9 169 63.3
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.3e-60 236.5 148 72.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 2.2e-60 235.7 148 71.6
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 2.2e-60 235.7 159 66.7
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 2.9e-60 235.3 148 71.6
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.9e-60 235.3 153 70.6
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 5.0e-60 234.6 148 70.9
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.0e-60 234.6 148 70.9
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.0e-60 234.6 148 70.9
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 6.5e-60 234.2 122 82.0
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 8.5e-60 233.8 148 71.6
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.1e-59 233.4 147 71.4
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.5e-59 233.0 149 69.8
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.5e-59 233.0 148 70.3
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 7.2e-59 230.7 149 69.8
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 9.4e-59 230.3 157 66.9
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 9.4e-59 230.3 159 67.3
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-58 229.9 148 69.6
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 2.1e-58 229.2 156 66.7
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 2.1e-58 229.2 147 67.3
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.7e-58 228.8 129 77.5
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.6e-58 228.4 148 67.6
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 6.1e-58 227.6 148 68.2
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 8.0e-58 227.3 148 68.9
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.4e-57 226.5 148 68.9
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 1.8e-57 226.1 164 62.8
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.8e-57 226.1 148 68.2
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.3e-57 225.7 149 69.1
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 3.0e-57 225.3 147 68.0
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 4.0e-57 224.9 148 68.2
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.7e-57 224.2 149 68.5
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 6.7e-57 224.2 148 68.2
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.5e-56 223.0 148 66.2
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.5e-56 223.0 148 66.2
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 4.4e-56 221.5 148 66.2
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 4.4e-56 221.5 148 66.2
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.4e-56 221.5 148 66.9
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 5.7e-56 221.1 159 62.3
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.5e-56 220.7 148 68.9
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.5e-56 220.7 148 68.9
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 7.5e-56 220.7 148 68.9
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.3e-55 219.9 148 66.9
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.7e-55 219.5 148 65.5
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.7e-55 219.5 146 68.5
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 2.2e-55 219.2 148 64.9
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 2.8e-55 218.8 146 67.8
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 3.7e-55 218.4 148 65.5
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 4.8e-55 218.0 148 65.5
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 4.8e-55 218.0 123 74.8
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 4.8e-55 218.0 145 68.3
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 8.2e-55 217.2 148 64.9
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.4e-54 216.5 148 64.2
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 2.4e-54 215.7 149 65.1
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 2.4e-54 215.7 149 65.8
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 2.4e-54 215.7 149 65.8
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 2.4e-54 215.7 145 67.6
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 4.1e-54 214.9 151 64.2
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 5.3e-54 214.5 148 64.2
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.2e-53 213.4 148 66.9
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.2e-53 213.4 148 65.5
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.6e-53 213.0 148 63.5
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 2.7e-53 212.2 148 64.9
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.2e-52 209.1 148 64.9
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.8e-52 208.4 147 65.3
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.5e-52 207.6 147 65.3
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.5e-51 206.5 148 64.2
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.5e-51 206.5 156 64.1
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 2.5e-51 205.7 112 77.7
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 5.5e-51 204.5 129 70.5
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 7.2e-51 204.1 129 69.8
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.6e-50 203.0 147 62.6
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 6.1e-50 201.1 155 60.0
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 6.1e-50 201.1 121 71.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 1.4e-49 199.9 144 62.5
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.8e-49 199.5 118 72.9
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.3e-49 199.1 143 62.9
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 4.0e-49 198.4 118 72.0
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 3.4e-48 195.3 112 75.9
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 5.7e-48 194.5 124 69.4
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 3.7e-47 191.8 159 57.9
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 3.7e-47 191.8 159 57.9
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.6e-42 176.4 172 49.4
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 8.9e-41 170.6 175 50.9
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.2e-37 160.2 120 61.7
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 2.0e-37 159.5 127 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.0e-36 157.1 130 53.1
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 8.6e-36 154.1 145 51.0
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 3.6e-34 148.7 143 51.0
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.2e-31 139.4 87 70.1
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 2.7e-29 132.5 72 79.2
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 7.8e-29 131.0 144 44.4
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 8.9e-25 117.5 128 49.2
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 1.2e-24 117.1 59 86.4
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.6e-24 115.9 76 72.4
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 2.2e-23 112.8 58 81.0
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.9e-22 109.8 81 63.0
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 9.2e-22 107.5 80 62.5
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.3e-19 99.0 80 58.8
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 5.6e-19 98.2 75 64.0
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 7.3e-19 97.8 109 45.0
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.1e-17 94.0 54 72.2
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 1.3e-15 87.0 58 74.1
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 4.1e-14 82.0 105 44.8
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 6.6e-12 74.7 113 36.3
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 9.5e-11 70.9 94 40.4
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.2e-10 68.2 58 51.7
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.8e-09 66.6 63 49.2
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 2.4e-09 66.2 78 41.0
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 5.2e-09 65.1 102 35.3
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 5.2e-09 65.1 62 50.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 5.2e-09 65.1 62 50.0
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.5e-08 63.5 63 47.6
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 1.5e-08 63.5 49 57.1
Hma1.2p1_1396F.1_g280590 Hydrangea macrophylla HOM05D005538 ORTHO05D228224 4.4e-08 62.0 67 50.7
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.4e-06 56.2 46 54.3


User provided reference genes

Program Settings